Use asyncio for Zarr retrieval (experimental)#271
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tomwhite wants to merge 1 commit intosgkit-dev:mainfrom
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Use asyncio for Zarr retrieval (experimental)#271tomwhite wants to merge 1 commit intosgkit-dev:mainfrom
tomwhite wants to merge 1 commit intosgkit-dev:mainfrom
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test_variant_chunk_iter_async async query working, try: vcztools query -f '[%CHROM %POS %SAMPLE %GT %DP %GQ]' -s 'NA00002,NA00003' vcz_test_cache/sample.vcz Add region support. Try: vcztools query -f '[%CHROM %POS %SAMPLE %GT %DP %GQ]' -r '20:1230236-' -s 'NA00002,NA00003' vcz_test_cache/sample.vcz Filter working. Try: vcztools query -f '[%CHROM %POS %SAMPLE %GT %DP %GQ]' -r '20:1230236-' -i 'FMT/DP>3' -s 'NA00002,NA00003' vcz_test_cache/sample.vcz View (without header) working. Try: vcztools view -H vcz_test_cache/sample.vcz perf stats Move async retrieval into own module
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Not to be merged. I found it ran about 20% faster on a local performance test. Would probably be more useful for reading from an object store.