Orthomcl split peripheral#82

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rdemko2332 wants to merge 24 commits intomasterfrom

orthomcl_split_peripheral

Commits on Jan 30, 2026

Splitting peripheral orthofinder into multiple nextflow workflow calls to ease processing
rdemko2332
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Commits on Feb 2, 2026

Adding new make nextflow config steps for ortho peripheral segments
rdemko2332
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Commits on Feb 27, 2026

Merge branch 'master' into orthomcl_split_peripheral
rdemko2332
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Commits on Mar 4, 2026

Commits on Mar 5, 2026

Updating dependency for insertPreviousGroupsMapping
rdemko2332
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Commits on Mar 17, 2026

Changing undo for CopyPeripheralGroupResultsFromCache. Can't just clear the analysisDir
rdemko2332
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Commits on Mar 19, 2026

Adding new nextflow post processing parameters to config to generate gene trees
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Commits on Mar 24, 2026

Commits on Mar 25, 2026

Creating directories from cache if they do not exist
rdemko2332
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Commits on Mar 27, 2026

Resolving group fasta name collision
rdemko2332
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Commits on Mar 30, 2026

Updating strategy for groupStats in cache
rdemko2332
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Commits on Mar 31, 2026

Copy gene trees from cache to post processing
rdemko2332
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