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…s to ease processing
- PredictEcNumbers: replace orthomclEcPrediction call with assignEcByOrthologs.pl --threshold 0.4; drop unused outputDir param - InsertOrthoMCLDerivedECGenomic: drop aaSeqLocusTagMappingSql arg (aa_sequence_id now comes directly from the input file) - OrthoMCLDependent.xml: remove outputDir and idSql paramValues Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…ar the analysisDir
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