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45 changes: 35 additions & 10 deletions src/spikeinterface/metrics/template/template_metrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -169,6 +169,24 @@ def _handle_backward_compatibility_on_load(self):
if "waveform_ratios" not in self.params["metric_names"]:
self.params["metric_names"].append("waveform_ratios")

if self.data.get("peaks_data") is None:
import pandas as pd

self.data["peaks_data"] = pd.DataFrame(
columns=get_peaks_data_columns(), index=self.sorting_analyzer.unit_ids
)

if self.data.get("main_channel_templates") is None:
num_units = self.sorting_analyzer.get_num_units()
if self.sorting_analyzer.has_extension("templates"):
templates_ext = self.sorting_analyzer.get_extension("templates")
template_samples = templates_ext.nbefore + templates_ext.nafter
upsampling_factor = self.params["upsampling_factor"]
upsampled_template_samples = template_samples * upsampling_factor
self.data["main_channel_templates"] = np.zeros((num_units, upsampled_template_samples))
else:
warnings.warn("Cannot set all `template_metrics` metadata as `templates` extension is not available.")

def _set_params(
self,
metric_names: list[str] | None = None,
Expand Down Expand Up @@ -315,16 +333,8 @@ def _prepare_data(self, sorting_analyzer, unit_ids):
tmp_data["depth_direction"] = self.params["depth_direction"]

# Add peaks_info and preprocessed templates to self.data for storage in extension
columns = []
for k in ("trough", "peak_before", "peak_after"):
for suffix in (
"index",
"width_left",
"width_right",
"half_width_left",
"half_width_right",
):
columns.append(f"{k}_{suffix}")
columns = get_peaks_data_columns()

tmp_data["peaks_data"] = pd.DataFrame(
index=unit_ids,
data=peaks_info,
Expand All @@ -335,6 +345,21 @@ def _prepare_data(self, sorting_analyzer, unit_ids):
return tmp_data


def get_peaks_data_columns():
"""Generates the column names of the `peaks_data` DataFrame."""
columns = []
for k in ("trough", "peak_before", "peak_after"):
for suffix in (
"index",
"width_left",
"width_right",
"half_width_left",
"half_width_right",
):
columns.append(f"{k}_{suffix}")
return columns


register_result_extension(ComputeTemplateMetrics)
compute_template_metrics = ComputeTemplateMetrics.function_factory()

Expand Down
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