Installing cvapipe

Use the following steps to install cvapipe_analysis:

1. Create a new conda environment. If you don't have conda installed, please follow this. Then, on your terminal type:

conda create --name cvapipe python=3.8

2. Active the new environment:

conda activate cvapipe

3. Go to the folder where you want cvapipe_analysis installed and type:

git clone https://github.com/AllenCell/cvapipe_analysis.git

4. Install cvapipe_analysis and its dependencies:

cd cvapipe_analysis
pip install -e .

5. Test if cvapipe_analysis is working:

python -c "from cvapipe_analysis.tools import general; general.check_installation()"

You should see this message: :: cvapipe_analysis seems to be properly installed! ::.