feat: BMDB integration, system prompt split, LLM speed-ups, dual-DB UI#66

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jcschaff wants to merge 60 commits into

mainfrom

Commits on Mar 1, 2026

adding some debugging messages for get_biomodels function
reeshapatel12
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debugging messages for vcell specific service.py and testing BIOMODELS_API_URL
reeshapatel12
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update system prompt for better formatting guidelines and consistency for each request
reeshapatel12
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add a test function for connecting BioModels API from frontend chat to backend llm functions
reeshapatel12
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add debugging messages to see how backend calls/process works
reeshapatel12
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update admin settings with the proper links/steps for setting up the repo
reeshapatel12
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In BioModel search, add a real biomodelID (270051643) as the default input and add another button 'provide history of model changes'
reeshapatel12
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edit BioModels search html setup for results page specific to model
reeshapatel12
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edit main chat page to add new function button at the bottom of display
reeshapatel12
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add new search box for querying BioModels Databa
reeshapatel12
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format the biomodel-specific page for results from BioModels database search
reeshapatel12
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add another section of buttons at the bottom of the main chat page, introduce and test handlesendmessage2 for sending queries to BMDB
reeshapatel12
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Commits on Mar 23, 2026

update loading history in sidebar to only load once per chat and update in real time
reeshapatel12
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Commits on Mar 25, 2026

update summarize tool function and add clearer timing logs
reeshapatel12
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Commits on Mar 26, 2026

Commits on Mar 29, 2026

editing system prompt to fix link formatting for biomodel names.
reeshapatel12
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Commits on Apr 2, 2026

add a tool summary to output to show how long the query/all tools took to generate the final response
reeshapatel12
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Commits on Apr 6, 2026

Commits on Apr 8, 2026

Commits on Apr 9, 2026

Commits on Apr 12, 2026

Commits on Apr 17, 2026

log the number of rows fetched for list of biomodels in the frontend output
reeshapatel12
committed

Commits on Apr 18, 2026