feat: Add NRM (Non-Reversibility Model) analysis support#93
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stevenweaver wants to merge 2 commits into
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feat: Add NRM (Non-Reversibility Model) analysis support#93stevenweaver wants to merge 2 commits into
stevenweaver wants to merge 2 commits into
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Implement full NRM analysis support across both WASM and backend execution modes: - Mark NRM as supported in MethodSelector with rate_classes and triple_islands parameters - Add comprehensive NRM configuration to methodOptions.toml with all parameters - Implement NRM parameter mapping in BackendAnalysisRunner for server-side execution - Add NRM command mapping (NRM.bf) and result file handling in WasmAnalysisRunner - Add NRM visualization routing in AnalysisResultViewer (raw results display) - Add rate_classes parameter handler for WASM execution NRM detects directional evolutionary pressure by testing for asymmetric evolution where the rate of change from amino acid A to B differs significantly from B to A. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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Resolves conflicts to include both NRM and RELAX methods: - methodOptions.toml: Added both [nrm] and [relax] configs - MethodSelector.svelte: Added both 'nrm' and 'relax' to SUPPORTED_METHODS - BackendAnalysisRunner.js: Added both nrm and relax cases - WasmAnalysisRunner.js: Added NRM to methodCommandMap and resultFileMap 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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Summary
Implements full NRM (Non-Reversibility of the Evolutionary Process) analysis support across both WASM and backend execution modes.
Changes
rate_classesandtriple_islandsparametersNRM.bf) and result file handling in WasmAnalysisRunnerrate_classesparameter handler for WASM executionMethod Details
NRM detects directional evolutionary pressure by testing for asymmetric evolution where the rate of change from amino acid A to B differs significantly from B to A, indicating directional selection pressures.
Parameters
Testing
nrm:spawnsocket eventNRM.bfbatch file, outputs to.NRM.json🤖 Generated with Claude Code