TNT Dockers

Tychele N. Turner, Ph.D.

Last Update: June 8, 2024

This table contains the Dockers I have built and their utilities. My DockerHub is located here.

Docker Name	Docker Link	Dockerfile	Docker Folder (for other files)	Program Location
tychelewustl/whatshap:v.2.3	Link	Dockerfile	Folder	/root/.local/bin/whatshap
tychelewustl/hifiasm:version3	Link	Dockerfile	Folder	/opt/conda/bin/hifiasm
tychelewustl/test2:rdna	Link	Dockerfile	Folder	several requisites for running RNA scripts, digital karyotype scripts
tychelewustl/bwa:version1	Link	Dockerfile	Folder	several requisites for running manta and bwa
tychelewustl/qmer_fcn:version1	Link	Dockerfile	Folder	several requisites for running QuicK-mer2 and fastCN
tychelewustl/minimap2:version1	Link	Dockerfile	Folder	/opt/conda/bin/minimap2
tychelewustl/isoseq3:version1	Link	Dockerfile	Folder	several programs for isoseq3 analyses
tychelewustl/exomiser_b38:version1	Link	Dockerfile	Folder	/opt/conda/bin/java -jar exomiser-cli-12.1.0.jar
tychelewustl/test2:egp	Link	Dockerfile	Folder	several requisites for EGP
tychelewustl/test2:sig2	Link	Dockerfile	Folder	SigProfilerSimulator related scripts
tychelewustl/unfazed:v1.0.2	Link	Dockerfile	Folder	unfazed related scripts
tychelewustl/asciigenome:version1	Link	Dockerfile	Folder	/opt/conda/bin/ASCIIGenome
tychelewustl/julia:dfvcfap	Link	Dockerfile	Folder	julia docker with VCFTools, DataFrames, and ArgParse packages installed
tychelewustl/julia:dfvcfap	Link	Dockerfile	Folder	(dfvcfapgz) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed
tychelewustl/julia:dfvcfap3	Link	Dockerfile	Folder	(dfvcfapgz3) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed
tychelewustl/juliapython:version4	Link	Dockerfile	Folder	(version4) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed as well as Python, Snakemake, and capabilities to run Snakemake on LSF
tychelewustl/disopred:trial1	Link	Dockerfile	Folder	(trial1) Docker with disopred
tychelewustl/fldpnn:trial1	Link	Dockerfile	Folder	Docker with fldpnn
tychelewustl/gfatools_caln50:version1	Link	Dockerfile	Folder	/gfatools/gfatools /opt/conda/bin/k8 calN50/calN50.js
tychelewustl/hatflex_linux:v1.0a	Link	Dockerfile	Folder	hat-flex

This table contains Dockers I have used that were created by others

Docker Name
google/deepvariant:1.0.0
quay.io/mlin/glnexus:v1.2.7