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C API C_1.3.0

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@github-actions github-actions released this 26 Jan 16:38
· 100 commits to main since this release
C_1.3.0
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Breaking changes

  • trees.c now depends on genotypes.c (via tskit/genotypes.h) and must
    be built and linked together with it.
    (@benjeffery, #3324)

Features

  • tsk_variant_init and associated variant decoding methods now
    fully support TSK_ISOLATED_NOT_MISSING not being set for internal nodes.
    (@benjeffery, #3313)

  • Add tsk_treeseq_decode_alignments to decode full-length reference-based
    sequence alignments for specified nodes over a genomic interval, respecting
    TSK_ISOLATED_NOT_MISSING semantics.
    (@benjeffery, #3324, #3319)

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