Read Carl Zeiss image files (CZI).
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Apr 30, 2026 - Python
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zeiss-czi-files
Here are 11 public repositories matching this topic...
napari plugin to open CZI image files and their metadata
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Apr 10, 2026 - Python
Python module utilizing libCZI for reading Zeiss CZI files.
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Mar 11, 2020 - Python
Small python package to simplify reading CZI Image Metadata (*.czi)
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Mar 25, 2023 - Jupyter Notebook
read and write CZI-documents from MATLAB and Octave
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Jun 13, 2025 - C++
Convert Zeiss CZI to SimFCS B64 files.
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Jul 1, 2022 - C++
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
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Dec 9, 2021 - Python
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
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Nov 4, 2021 - Java
converts your czi images to pngs
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Dec 19, 2024 - Python
A specialized batch-processing pipeline for Zeiss CZI files. Optimized for ApoTome & Brain sections. Fixes hyperstack dimensions, recovers LUTs, and removes shading via rolling-ball pre-processing.
metadata bioinformatics imagej fiji mit-license batch-script image-stitching microscopy jython life-sciences whole-slide-imaging czi zeisshack zeiss-czi-files microscopy-data bioimage vibe-coding
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Feb 13, 2026 - Python
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