A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Automatic descriptor selection and volcano curve generation

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets

A shiny app for custom analyzes of preprocessed omics data

Data for volcano3D package

a polar representation of multiple volcano plots

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

Analyse d'expression différentielle de gènes avec le logiciel R

Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.

Useful R functions for Multi-omics analyses

This project visualizes Treatment-Emergent Adverse Events(TEAE) in a single graph.

Bioinformatics and statistical analysis of peer-reviewed papers in Dr. Martha Bhattacharya's lab at the University of Arizona. Overlaps with Itch, Endo, and Hippo repos

A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.

A Shiny interface to analyse Olink data

Interactive comparison of gene expression across 13 prostate-cancer cell lines (DepMap Public 26Q1): volcano plot, differential-gene table, and per-gene profiles. Live: https://yangcui0612.github.io/prostate-cell-line-expression/

Tuxedo-procedure-for-RNA-SEQ-analysis

Course Work for Practical Bioinformatics Course BIO231, Assignments of BLAST,GenBANK search, NCBI ENTREZ API. Microarray Analysis