Tandem repeat expansion detection or genotyping from long-read alignments
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Mar 25, 2026 - Python
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tandem-repeats
Here are 35 public repositories matching this topic...
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Mar 4, 2026 - C
Toolkit for VNTR genotyping and repeat-pan genome graph construction
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Aug 18, 2025 - Python
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
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Jun 17, 2024 - C
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
nanopore genomics alignment variant-calling tandem-repeats copy-number-variation long-reads ont-data
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Jul 11, 2022 - Python
tandemtwister: Tandem repeat genotyping tool
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Feb 1, 2026 - C++
A python library for decomposing and visualizing tandem repeat sequences
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Feb 23, 2024 - Python
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
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Sep 7, 2023 - C++
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
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Aug 6, 2024 - Python
Universal STR Allele Toolkit (USAT) for viewing and comparison
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Nov 26, 2022 - Java
Tandem Repeat Visualization Tool that serves as the companion tool to TandemTwister.
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Feb 4, 2026 - TypeScript
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
bioinformatics proteins multithreading cpp11 edit-distance dna rna tandem-repeats cplusplus-11 biological-sequences independent-study suffix-array computer-science-department brooklyn-college cisc-5001 landau-vishkin
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May 27, 2020 - C++
Targeted characterisation of short structural variation.
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Jan 12, 2022 - Python
Computational, High-throughput Individual Identification through Microsatellite Profiling
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Feb 12, 2026 - R
Long Read Human first SNP, SV, Phasing and more, powered by Snakemake
snakemake annotation pacbio tandem-repeats snp-genotyping minimap2 whatshap structural-variation-calling
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Feb 19, 2026 - Python
ECHO: a pipeline to analyse the human repeatome using Oxford Nanopore Technologies (ONT) long-read sequencing data, written in Snakemake
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Mar 17, 2026 - Python
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