✏️ A versatile DNA sequence optimizer
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Nov 5, 2025 - Python
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sequence-design
Here are 21 public repositories matching this topic...
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
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May 10, 2025 - Python
🎨 Python library to plot multi-part genetic constructs
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Apr 9, 2025 - Python
🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
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Dec 10, 2022 - Vue
➰ Draw genetic elements with HTML & CSS
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May 6, 2026 - HTML
Batch domestication of genetic parts with Python
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May 12, 2025 - Python
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
bioinformatics scientific-computing rna secondary-structure simulation-modeling sequence-design bioinformatics-tool eterna
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Jul 17, 2024 - Python
🔗 Short overhangs design for DNA assembly
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Jun 8, 2022 - Python
[Adv. Sci. 2025] PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization
machine-learning computational-biology protein-design sequence-design diffusion-models latent-diffusion-models
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Jul 11, 2025 - Python
✂️ Design compact restriction sites arrays (python utility)
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Apr 9, 2025 - Python
🔮 Predict DNA assembly clone validity rates - powered by Kappa
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Jul 24, 2020 - Python
Python client for Ginkgo's AI model API
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Mar 10, 2025 - Python
A PyPulseq-based client/server MR sequence design toolbox.
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Aug 14, 2026 - Python
GFlowNets for RNA sequence design
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Apr 16, 2026 - Python
cDWI, cDTI, cardiacDTI, design of DWI sequences (SE, STEAM, TRSE), gradient sampling shells, processing helix angle (HA), sheet angle (E2A, SA), transverse angle (TA)
shell mri heart phantom dwi numerical diffusion synthetic dti cardiac sequence-design myocardium diffusion-tensor-imaging congenital-heart-disease mri-sequences cdti cdwi helix-angle sheet-angle transverse-angle
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Sep 10, 2020 - Mathematica
A Python client for communication between Pulseq interpreter and Pulseq design server.
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Oct 31, 2024 - Python
ProteinMPNN MCP server for protein sequence design (inverse folding)
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
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Feb 23, 2026 - Python
Attack-as-Design: turning adversarial-attack search on a surrogate into validated biological sequence design. Paper, runnable notebook, code, and explainer video.
machine-learning bioinformatics computational-biology protein-design adversarial-examples sequence-design
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Jul 14, 2026 - Jupyter Notebook
Scalarization-free multi-objective preference alignment for generative CRISPR sgRNA design — standard DPO over Pareto-dominance preferences. Reproducible seeded pipeline, publication figures, and reviewer responses. Runs in <0.6 GB VRAM.
bioinformatics deep-learning genomics pytorch generative-model crispr multi-objective-optimization pareto preference-learning sequence-design sgrna dpo guide-rna rlhf direct-preference-optimization
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Aug 14, 2026 - Python
LigandMPNN MCP server for ligand-aware scaffold-based sequence generation (inverse folding)
bioinformatics deep-learning mcp protein-design inverse-folding protein-engineering sequence-design model-context-protocol
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Feb 23, 2026 - Python
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