A pocket volume analyzer for use in protein modeling.

bedtools - the swiss army knife for genome arithmetic

Experiments with expanded ensembles to explore chemical space

Python implementation of the multistate Bennett acceptance ratio (MBAR)

IQ-TREE software version 2: phylogenetics by maximum likelihood

Solvation Structure and Thermodynamic Mapping

Protein and nucleic acid validation service

A Python Package for Protein Dynamics Analysis

macromolecular crystallography library and utilities

A comprehensive library for computational molecular biology

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Biomolecular simulation trajectory/data analysis.

Identification of Protein-Ligand Binding Sites using dipolar EPR data

Powerful, efficient particle trajectory analysis in scientific Python.

The Open Free Energy toolkit

Dynamic pharmacophore modeling of molecular interactions

Computational Crystallography Toolbox

Python interface of cpptraj

Official git repository for Biopython (originally converted from CVS)