Computational protemics analysis of cancer cell-lines at the level of single-cells
Spatial transcriptomics analysis of rat gut under CD/PBS, HFD/PBS and HFD/TZP conditions, including DEG, GO enrichment and figure-generation workflows for the tirzepatide manuscript.
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
do you want to know how machine learning + genetics can help understand species extinction on climate change? click here to find more
End-to-end NGS variant calling and functional annotation pipeline for Limulus polyphemus using GATK and SnpEff, with biological interpretation of high-impact immune and metabolic variants.
This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results
A comparative genomics pipeline for identifying and characterising tissue-specific and stress-responsive lncRNAs in conifers using minimap2, bedtools, and GO/KEGG enrichment analysis.
Local web platform for orthology-based proteome/proteomics comparison and Gene Ontology enrichment. Run OrthoFinder, explore orthogroups, and perform GO enrichment locally with publication-ready outputs.
End-to-end bioinformatics portfolio: RNA-seq DE analysis (silver fox domestication, GEO GSE76517), TCGA-KIRC clinical survival analysis, and scRNA-seq of PBMCs (Seurat v5). Fully reproducible from raw data to publication-quality figures.
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