Agent execution layer for biology workflows: batch gene scanning, tumor cohort briefing, target discovery — with structured outputs, resume, and pipeline-ready artifacts

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.

A context to create cBioPortal docker images

A repository with easy-to-follow instructions on how to prepare you study data files for upload into cBioportal

cBioPortal topic branches at The Hyve

🧬 Convert FoundationOne genomic reports to cBioPortal OncoPrinter format — visualize mutations, CNVs, and fusions

Data extraction, transformation and loading pipeline for the Princess Maxima Center

This repository contains all machine learning and statistical models used to analyze the landscape of colorectal cancer.

React Frontend of cBioPortal 🎉

Context to create cBioPortal docker images

a collection of notebooks containing analysis and visualization methods with publicly available data

Miscellaneous scripts for wrangling cancer genomic data

cBioPortal study package for melanoma COLO-829 test case with BRAF V600E mutation - Health Big Data MTB Platform

The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.

Run cBioPortal using Docker Compose