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Tidy se optimisation#4

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stemangiola merged 15 commits intomainfrom
tidySE-optimisation
Mar 22, 2026
Merged

Tidy se optimisation#4
stemangiola merged 15 commits intomainfrom
tidySE-optimisation

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This commit introduces a new post detailing performance enhancements in tidySummarizedExperiment through query optimization and the use of the plyxp backend. It includes a comprehensive benchmarking analysis comparing performance before and after the optimization, along with visualizations. Additionally, two new image files, 'benchmark_plot.png' and 'logo.png', are added to support the content.
This commit introduces a .gitignore file to exclude temporary benchmark files, specifically '.__bench_before__' and '.__bench_after__', from version control in the tidySummarizedExperiment optimization post directory.
This commit introduces a .gitignore file in the posts directory to prevent version control of temporary benchmark files, specifically '.__bench_before__' and '.__bench_after__', related to the tidySummarizedExperiment optimization post.
Updated the description for clarity and conciseness.
mikelove and others added 8 commits March 18, 2026 09:07
add detail on plyxp origin, data-masking and rlang
…in the tidySummarizedExperiment optimization post. Added new libraries for enhanced functionality and improved code structure for performance analysis.
@stemangiola stemangiola merged commit 8143899 into main Mar 22, 2026
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Speedup nest and unnest for massive dataset in tidySummarizedExperiment

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