Test/no rule evals#12
Draft
janisshin wants to merge 19 commits into
Draft
Conversation
…uation) through rulesbased
…s fallback
- Add a rule-based KEGG reaction curation path to `curate_single_model` and extract the KEGG-specific logic into `curate_reactions_kegg_rulebased`.
- Extend URI parsing to accept identifiers.org `kegg.{reaction,compound}` in both `prefix:ID` and `prefix/ID` forms, and allow species annotation lookup for `database="kegg"` (KEGG compounds).
…el context for LLM ranking Allow species annotations as bare KEGG compounds (C#####) by treating them as identity mappings during ChEBI→KEGG normalization and relaxation. Also pass full model reaction context into the KEGG reaction LLM re-ranker and guard the rulebased workflow when no species mappings exist.
janisshin
force-pushed
the
test/no-rule-evals
branch
from
222e2c3 to
1191e5f
Compare
group candidates by iubmb instead of orthology; add log statements for LLM responses
…aion candidate" This reverts commit 3b23d73.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.