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Add GDSC Dataset#719

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anumala2 wants to merge 3 commits intosunlabuiuc:masterfrom
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Add GDSC Dataset#719
anumala2 wants to merge 3 commits intosunlabuiuc:masterfrom
anumala2:master

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@anumala2 anumala2 commented Dec 8, 2025

Purpose

This pull request aims to add the drug information dataset from the Genomics of Drug Sensitivity in Cancer to the pyhealth library. The GDSC drug_info table is a drug-centric metadata table that describes compounds screened across the Genomics of Drug Sensitivity in Cancer (GDSC) cell-line drug-sensitivity project. Typical columns include unique drug identifiers, canonical names, alternate names/synonyms, molecular or protein targets, higher-level pathways targeted, external chemical identifiers (e.g., PubChem CID), and bookkeeping counts such as sample sizes or number of experiments. The broader GDSC resource pairs these drug metadata with measured drug response (e.g., IC50) across hundreds to thousands of cancer cell lines, enabling pharmacogenomic analyses. This data is sourced from the extending-cadre repository.

@Logiquo Logiquo added the component: dataset Contribute a new dataset to PyHealth label Dec 18, 2025
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This PR has been automatically marked as stale because it has not had recent activity. It will be closed in 7 days if no further activity occurs.

@github-actions github-actions Bot added the stale label Mar 19, 2026
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This PR has been automatically closed due to inactivity. Please re-open it if you think it is still relevant.

@github-actions github-actions Bot closed this Mar 26, 2026
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