Bioinformatics

Workflows and scripts related to Bioinformatics

Name		Name	Last commit message	Last commit date
Latest commit History 523 Commits
ANNOVAR-2-REDCap		ANNOVAR-2-REDCap
Benchmarking		Benchmarking
ChIPseeker_profile_plots		ChIPseeker_profile_plots
DiffBind		DiffBind
DiffBind_scripts_reports		DiffBind_scripts_reports
HITS-CLIP_pipeline		HITS-CLIP_pipeline
HOMER_mergePeaks_pipeline		HOMER_mergePeaks_pipeline
HOMER_motif_analysis		HOMER_motif_analysis
HiC-Bench-utils		HiC-Bench-utils
IGV-snapshot-wrapper		IGV-snapshot-wrapper
MACS2-params-testing		MACS2-params-testing
MuTect2-filter-testing		MuTect2-filter-testing
MuTect2-variant-aggregation		MuTect2-variant-aggregation
NYGC_download		NYGC_download
Oncomine		Oncomine
Oncomine_NGS50_overlap		Oncomine_NGS50_overlap
PAR-CLIP_pipeline		PAR-CLIP_pipeline
Python_scripts		Python_scripts
QualityControl		QualityControl
SeraCare_variant_analysis		SeraCare_variant_analysis
SuperEnhancer_calling		SuperEnhancer_calling
UCSC_custom_tracks		UCSC_custom_tracks
anaconda		anaconda
annotate_peaks_ChIPpeakAnno		annotate_peaks_ChIPpeakAnno
bedtools_coverage_chrY		bedtools_coverage_chrY
benchmarking_GetBaseCountsMultiSample		benchmarking_GetBaseCountsMultiSample
bowtie2_alignment_indexing		bowtie2_alignment_indexing
clustering_heatmaps		clustering_heatmaps
code		code
data		data
fastq_filter_by_region		fastq_filter_by_region
fusions-Delly2		fusions-Delly2
gene_plots		gene_plots
genomic_signatures		genomic_signatures
get_TSS_regions_Gencode_Ensembl		get_TSS_regions_Gencode_Ensembl
iGenomes		iGenomes
misc_workflow		misc_workflow
mutational_signatures-deconstructSigs		mutational_signatures-deconstructSigs
peak_overlap_multi_report		peak_overlap_multi_report
peaks-per-sample_HiCBench-MACS2_report		peaks-per-sample_HiCBench-MACS2_report
peaks_annotation_summaries_ChIPSeeker		peaks_annotation_summaries_ChIPSeeker
peaks_vs_alignments_per_sample_plots		peaks_vs_alignments_per_sample_plots
pipeline-peaks-report		pipeline-peaks-report
python_read_heredoc		python_read_heredoc
reverse_compliment-shiny		reverse_compliment-shiny
sample-data		sample-data
scripts		scripts
signatures_aggregate		signatures_aggregate
survival		survival
tcga-tmb-analysis		tcga-tmb-analysis
.gitignore		.gitignore
MACS1_BigWig_workflow.sh		MACS1_BigWig_workflow.sh
README.md		README.md
bed_chrom_split.py		bed_chrom_split.py
bed_dir_barplot.R		bed_dir_barplot.R
bowtie2_MACS1_bedGraph_workflow2.sh		bowtie2_MACS1_bedGraph_workflow2.sh
clusterProfiler_DiffBind_GO_pipeline.R		clusterProfiler_DiffBind_GO_pipeline.R
enable_sns_setx.sh		enable_sns_setx.sh
find_missing_file.py		find_missing_file.py
find_missing_files.py		find_missing_files.py
find_missing_samples.py		find_missing_samples.py
phoenix_cluster_HOMER_example.md		phoenix_cluster_HOMER_example.md
references.bib		references.bib
run_MuTect2_split.sh		run_MuTect2_split.sh
run_gtools_make_matrices.py		run_gtools_make_matrices.py
sort-bed.sh		sort-bed.sh
toolbox.py		toolbox.py
transfer_BaseSpace_to_NGS_sequencer_dir.sh		transfer_BaseSpace_to_NGS_sequencer_dir.sh

Navigation Menu

Repository files navigation

Bioinformatics

About

Releases

Packages

Contributors

Languages

Folders and files

Latest commit

History

Repository files navigation

Bioinformatics

About

Topics

Resources

Stars

Watchers

Forks

Releases

Packages

Contributors

Languages