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Merged
LucaMarconato merged 2 commits into from
May 5, 2026
+12 −9
Merged

Add Python 3.14 support #1114

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301b6f9
improve CI matrix job names
LucaMarconato May 5, 2026
f3218bf
fix zarr v3 URL-parsing truncating element names with special chars
LucaMarconato May 5, 2026
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15 changes: 9 additions & 6 deletions .github/workflows/test.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -19,12 +19,15 @@ jobs:
fail-fast: false
matrix:
include:
- {os: windows-latest, python: "3.11", dask-version: "2025.12.0", name: "Dask 2025.12.0"}
- {os: windows-latest, python: "3.13", dask-version: "latest", name: "Dask latest"}
- {os: ubuntu-latest, python: "3.11", dask-version: "latest", name: "Dask latest"}
- {os: ubuntu-latest, python: "3.13", dask-version: "latest", name: "Dask latest"}
- {os: macos-latest, python: "3.11", dask-version: "latest", name: "Dask latest"}
- {os: macos-latest, python: "3.13", prerelease: "allow", name: "Python 3.13 (pre-release)"}
- {os: windows-latest, python: "3.11", dask-version: "2025.12.0", name: "min dask"}
- {os: windows-latest, python: "3.13", dask-version: "latest"}
- {os: windows-latest, python: "3.14", dask-version: "latest"}
- {os: ubuntu-latest, python: "3.11", dask-version: "latest"}
- {os: ubuntu-latest, python: "3.13", dask-version: "latest"}
- {os: ubuntu-latest, python: "3.14", dask-version: "latest"}
- {os: macos-latest, python: "3.11", dask-version: "latest"}
- {os: macos-latest, python: "3.13", prerelease: "allow", name: "prerelease"}
- {os: macos-latest, python: "3.14", prerelease: "allow", name: "prerelease"}
env:
OS: ${{ matrix.os }}
PYTHON: ${{ matrix.python }}
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2 changes: 1 addition & 1 deletion src/spatialdata/_io/io_points.py
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Expand Up @@ -24,7 +24,7 @@ def _read_points(
store: str | Path,
) -> DaskDataFrame:
"""Read points from a zarr store."""
f = zarr.open(store, mode="r")
f = zarr.open(Path(store), mode="r") # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names

version = _parse_version(f, expect_attrs_key=True)
assert version is not None
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2 changes: 1 addition & 1 deletion src/spatialdata/_io/io_shapes.py
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Expand Up @@ -34,7 +34,7 @@ def _read_shapes(
store: str | Path,
) -> GeoDataFrame:
"""Read shapes from a zarr store."""
f = zarr.open(store, mode="r")
f = zarr.open(Path(store), mode="r") # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names
version = _parse_version(f, expect_attrs_key=True)
assert version is not None
shape_format = ShapesFormats[version]
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2 changes: 1 addition & 1 deletion src/spatialdata/_io/io_table.py
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Expand Up @@ -22,7 +22,7 @@
def _read_table(store: str | Path) -> AnnData:
table = read_anndata_zarr(str(store))

f = zarr.open(store, mode="r")
f = zarr.open(Path(store), mode="r") # Path avoids zarr v3 URL-parsing special chars (e.g. #) in names
version = _parse_version(f, expect_attrs_key=False)
assert version is not None
table_format = TablesFormats[version]
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