Reduce warnings#1113
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LucaMarconato merged 13 commits intomainfrom May 5, 2026
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- Use zip(strict=True) when converting tuple chunks to dict in RasterSchema - Copy AnnData views before modifying .uns in TableModel.parse - Use explicit string obs index in AnnData construction to avoid implicit index warnings - Add .copy() after compute()/slice to avoid pandas SettingWithCopyWarning (CoW) - Remove unused docs/_templates autosummary files - Update tutorials submodule Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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…into less-warnings
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1113 +/- ##
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- Coverage 91.93% 91.87% -0.07%
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Files 51 51
Lines 7772 7775 +3
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- Hits 7145 7143 -2
- Misses 627 632 +5
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…ss INFO noise Build the dataframe with only the coordinate columns actually needed for each branch: source columns (A/B/C) when a coordinates mapping is provided, target columns (x/y/z) otherwise. This prevents the rename-drop and z-ignored-in-2D INFO messages (240 occurrences) from firing during tests. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…o suppress WARNING noise The target column was a plain str Series; PointsModel.parse() converted it to an unknown-categories dask Categorical, triggering a performance warning on every parametrized invocation. Using pd.Categorical with known categories up-front avoids the conversion path entirely. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…format tests Use `re.match`-compatible pattern (anchored at start) and add `@pytest.mark.filterwarnings` to standalone parametrized tests outside `TestReadWrite` that intentionally exercise the V01 container format. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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…ilterwarnings Replace verbose autouse fixtures (catch_warnings + isinstance check) with a single @pytest.mark.filterwarnings decorator on each class/function. The isinstance guard was unnecessary because V02 tests never emit the warning, so the filter is a harmless no-op for them. Also removes now-unused `import warnings` from test_format.py and test_readwrite.py, and CurrentSpatialDataContainerFormat from test_attrs_io.py. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…into less-warnings
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Reduce warnings, in particular: