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Backport PR #4147 on branch 1.12.x (perf: welford's algorithm for mean-var aggregation)#4176

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ilan-gold merged 1 commit into
scverse:1.12.xfrom
meeseeksmachine:auto-backport-of-pr-4147-on-1.12.x
Jun 23, 2026
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Backport PR #4147 on branch 1.12.x (perf: welford's algorithm for mean-var aggregation)#4176
ilan-gold merged 1 commit into
scverse:1.12.xfrom
meeseeksmachine:auto-backport-of-pr-4147-on-1.12.x

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Backport PR #4147: perf: welford's algorithm for mean-var aggregation

@lumberbot-app lumberbot-app Bot added this to the 1.12.2 milestone Jun 23, 2026
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codecov Bot commented Jun 23, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.54%. Comparing base (288e3b9) to head (025e757).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##           1.12.x    #4176      +/-   ##
==========================================
- Coverage   78.56%   78.54%   -0.02%     
==========================================
  Files         121      121              
  Lines       12656    12650       -6     
==========================================
- Hits         9943     9936       -7     
- Misses       2713     2714       +1     
Flag Coverage Δ
hatch-test.low-vers 77.79% <100.00%> (-0.02%) ⬇️
hatch-test.pre 78.43% <100.00%> (-0.02%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/get/_aggregated.py 92.66% <100.00%> (-0.65%) ⬇️
src/scanpy/get/_kernels.py 100.00% <ø> (ø)

@ilan-gold ilan-gold merged commit d364f06 into scverse:1.12.x Jun 23, 2026
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2 participants