MRI-Toolkit

MRI-toolkit provides a set of features dedicated to human MRI data post-processing and analysis. The implementation is based on gMRI2FEM.

Installation

pip install mritk

Documentation

The documentation is available at https://scientificcomputing.github.io/mri-toolkit/. It includes detailed usage instructions, API references, and examples.

Quick Start

To get started with mri-toolkit, you can use the command-line interface (CLI) to inspect and analyze your MRI data.

Features

• File Inspection: detailed NIfTI header analysis (affine, voxel size, shape).
• Statistics: Compute comprehensive statistics (volume, mean, median, std, percentiles) for MRI regions based on segmentation maps.
• Visualization:
  • Terminal: View orthogonal slices (Sagittal, Coronal, Axial) directly in your console.
  • Napari: Launch the Napari viewer for interactive 3D inspection.
• Data Management: Utilities to download test datasets.