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Releases: sanger-pathogens/Fastaq

Version 3.18.0

24 Mar 10:43
5b1ce0a

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  • Packaging updated to use pyproject and hatch
  • Option --check_comments added to filter

Fastaq 3.17.0 with updated Dockerfile (peg samtools at 0.1.19)

19 Feb 12:00
6896bb5

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Merge pull request #79 from sanger-pathogens/add_dockerfile

Dockerfile: peg samtools version and downgrade to 0.1.19

Fastaq 3.17.0 with updated Dockerfile (adds samtools)

14 Feb 15:23
3443ab2

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Merge pull request #78 from sanger-pathogens/add_dockerfile

Undocumented dependency on samtools

Fastaq 3.17.0 with Dockerfile

20 Jan 11:07
d32fced

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Merge pull request #77 from sanger-pathogens/add_dockerfile

Add a Dockerfile; installs fastaq on Ubuntu Bionic image

Fastaq 3.17.0 with Dockerfile

20 Jan 10:53
d32fced

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Pre-release
Merge pull request #77 from sanger-pathogens/add_dockerfile

Add a Dockerfile; installs fastaq on Ubuntu Bionic image

Version 3.17.0

19 Feb 11:50
892f4b9

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New method sequences.Fasta.gc_content()

Ignore comments in FASTQ readnames

29 Nov 11:36
d432535

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Update setup.py

Version went the wrong way

Version 3.15.0

10 Feb 15:44

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New task sort_by_name

Version 3.14.0

01 Sep 12:16

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New task acgtn_only

Version 3.13.0

12 Aug 13:58

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Small changes to to_random_subset:

  1. add --seed option to seed random number generator
  2. allow percent to be a float, not just integer