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Update nf-tests snapshots - workflow v1.4.4, blastdb from March 2026, taxonkit/taxondump from June 2025

enhancementNew feature or requestNew feature or request

Status: Open.

#252 In qcif/taxodactyl;

· mantczakaus opened on Apr 24, 2026

Can we have mini databases to make nf-tests reproducible to anyone

enhancementNew feature or requestNew feature or request

Status: Open.

#242 In qcif/taxodactyl;

· mantczakaus opened on Mar 26, 2026

Config YAML file and extra CLI --args don't seem to work

bugSomething isn't workingSomething isn't working

Status: Open.

#235 In qcif/taxodactyl;

· neoformit opened on Mar 3, 2026

Handle GBIF API limit for many samples run at once

1.3.3-1

1.4.4-dev

bugSomething isn't workingSomething isn't working

Status: Open.

#230 In qcif/taxodactyl;

· mantczakaus opened on Mar 2, 2026

·  

release_1.5

Refer to Australian Biosecurity Database accessions

enhancementNew feature or requestNew feature or request

Status: Open.

#229 In qcif/taxodactyl;

· neoformit opened on Feb 26, 2026

Write an nf-test for one of the nextflow modules

enhancementNew feature or requestNew feature or request

Status: Open.

#217 In qcif/taxodactyl;

· mantczakaus opened on Jan 12, 2026

Design test strategy

enhancementNew feature or requestNew feature or request

Status: Open.

#216 In qcif/taxodactyl;

· mantczakaus opened on Jan 12, 2026

Remove file names from params and configure env

enhancementNew feature or requestNew feature or request

Status: Open.

#213 In qcif/taxodactyl;

· mantczakaus opened on Jan 11, 2026

Automated tests of the html report (selenium?)

enhancementNew feature or requestNew feature or request

Status: Open.

#209 In qcif/taxodactyl;

· mantczakaus opened on Jan 7, 2026

Automated tests of the nextflow workflow (nf-test)

enhancementNew feature or requestNew feature or request

Status: Open.

#208 In qcif/taxodactyl;

· mantczakaus opened on Jan 7, 2026

Under-reported publications

bugSomething isn't workingSomething isn't working

Status: Open.

#206 In qcif/taxodactyl;

· neoformit opened on Dec 17, 2025

Report non-candidate TOI matches if no candidates

enhancementNew feature or requestNew feature or request

report

Status: Open.

#205 In qcif/taxodactyl;

· neoformit opened on Dec 17, 2025