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    • Jupyter Notebook
      1040Updated Feb 23, 2024Feb 23, 2024
    • 0000Updated Jan 25, 2024Jan 25, 2024
    • Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
      Python
      MIT License
      76000Updated May 27, 2023May 27, 2023
    • new implementation of MPRAsnakeflow fork of MPRAflow
      Python
      MIT License
      9000Updated May 22, 2023May 22, 2023
    • snakemake-wrappers

      Public
      This is the development home of the Snakemake wrapper repository, see
      CAP CDS
      212000Updated May 19, 2023May 19, 2023
    • grape

      Public
      genomic relatedness detection pipeline
      Python
      GNU General Public License v3.0
      7000Updated May 15, 2023May 15, 2023
    • .github

      Public
      0000Updated Apr 29, 2023Apr 29, 2023
    • bio-cwl-tools

      Public
      CWL CommandLineTool descriptions for biology/life-sciences related applications
      Common Workflow Language
      Apache License 2.0
      39000Updated Apr 27, 2023Apr 27, 2023
    • containers

      Public
      Bioinformatics containers
      Dockerfile
      Apache License 2.0
      266000Updated Apr 27, 2023Apr 27, 2023
    • The CWL v1.0 - v1.2 user guide
      Common Workflow Language
      Other
      65000Updated Apr 26, 2023Apr 26, 2023
    • cwltool

      Public
      Common Workflow Language reference implementation
      Python
      Apache License 2.0
      241000Updated Apr 25, 2023Apr 25, 2023
    • 0000Updated Apr 25, 2023Apr 25, 2023
    • Common Workflow Language
      1000Updated Jan 17, 2023Jan 17, 2023
    • CWL descriptions for FragPipe Proteomics Pipline
      Common Workflow Language
      1100Updated Apr 5, 2022Apr 5, 2022
    • 0000Updated Dec 2, 2021Dec 2, 2021
    • Common Workflow Language
      0030Updated Nov 5, 2021Nov 5, 2021
    • Common Workflow Language
      2000Updated Aug 30, 2021Aug 30, 2021
    • Templates used as starting points for cwl dev
      0000Updated Aug 26, 2021Aug 26, 2021
    • Common Workflow Language
      1000Updated Jul 23, 2021Jul 23, 2021
    • ICI

      Public
      Instance Specific Causal Inference
      Common Workflow Language
      0020Updated Jul 19, 2021Jul 19, 2021
    • Common Workflow Language
      0110Updated Jul 14, 2021Jul 14, 2021
    • Common Workflow Language
      1000Updated Jul 8, 2021Jul 8, 2021
    • ccwl

      Public
      Concise Common Workflow Language
      Scheme
      GNU General Public License v3.0
      2000Updated Jul 6, 2021Jul 6, 2021
    • GATK Best Practice Workflows
      Common Workflow Language
      0000Updated May 27, 2021May 27, 2021
    • Detecting Short Tandem Repeat Expansion on Terra Platform
      WDL
      1000Updated May 27, 2021May 27, 2021
    • CWL wrapper for MOGSA workflows
      Common Workflow Language
      0010Updated May 21, 2021May 21, 2021
    • A basic maftools workflow in CWL
      Common Workflow Language
      0000Updated Jan 25, 2021Jan 25, 2021
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