Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •11 fork•11 star•44 issues•11 pull request•Updated May 5, 2026May 5, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •55 forks•11 star•66 issues•11 pull request•Updated May 4, 2026May 4, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3535 forks•2020 stars•6161 issues•1010 pull requests•Updated May 2, 2026May 2, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks•66 stars•1515 issues•11 pull request•Updated May 1, 2026May 1, 2026

• napari-omero

  Public
  Browse your OMERO database from within napari.

  omeronapari-pluginnapari

  omeronapari-pluginnapari

  Python

  •

  GNU General Public License v2.0

  •1616 forks•4040 stars•1616 issues•55 pull requests•Updated May 1, 2026May 1, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •6868 forks•238238 stars•7171 issues•99 pull requests•Updated Apr 30, 2026Apr 30, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated Apr 30, 2026Apr 30, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •6767 forks•157157 stars•116116 issues•77 pull requests•Updated Apr 29, 2026Apr 29, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1010 forks•1212 stars•88 issues•55 pull requests•Updated Apr 28, 2026Apr 28, 2026

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •1010 forks•88 stars•66 issues•44 pull requests•Updated Apr 27, 2026Apr 27, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks•22 stars•00 issues•11 pull request•Updated Apr 27, 2026Apr 27, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1

  omerozarrngffome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •1111 forks•2020 stars•2424 issues•1111 pull requests•Updated Apr 27, 2026Apr 27, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks•55 stars•33 issues•33 pull requests•Updated Apr 27, 2026Apr 27, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2626 forks•5050 stars•3030 issues•66 pull requests•Updated Apr 27, 2026Apr 27, 2026

• ome-ngff-tools

  Public
  Document available viewers and other tools for the OME-NGFF image format

  ngffome-zarr

  ngffome-zarr

  BSD 3-Clause "New" or "Revised" License

  •1111 forks•44 stars•1212 issues•22 pull requests•Updated Apr 24, 2026Apr 24, 2026

• omero-guide-ilastik

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •55 forks•55 stars•33 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• EMBL-EBI-imaging-course-05-2023

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •44 forks•44 stars•22 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2020 stars•6161 issues•55 pull requests•Updated Apr 23, 2026Apr 23, 2026

• conda-bioformats2raw

  Public
  Bio-Formats image file format to raw format converter

  Batchfile

  •66 forks•88 stars•22 issues•22 pull requests•Updated Apr 23, 2026Apr 23, 2026

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1515 forks•00 stars•3131 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2

  pythoncomponentlibomeroomero-py

  Python

  •

  GNU General Public License v2.0

  •3535 forks•2828 stars•5757 issues•44 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  buildomerometa-repo

  Dockerfile

  •77 forks•11 star•33 issues•44 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1

  componentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•22 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •99 forks•1111 stars•1313 issues•77 pull requests•Updated Apr 21, 2026Apr 21, 2026

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•00 issues•33 pull requests•Updated Apr 21, 2026Apr 21, 2026

• EMBL-EBI-imaging-course-04-2025

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •66 forks•66 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  ome-ngffome-zarr-converter

  ome-ngffome-zarr-converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2020 forks•2121 stars•1313 issues•55 pull requests•Updated Apr 16, 2026Apr 16, 2026

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •44 forks•11 star•22 issues•1818 pull requests•Updated Apr 15, 2026Apr 15, 2026

• omero-guides

  Public
  Guides for using OMERO

  docshelpomero+ 3

  docshelpomeroguidesmanualsomero-training

  Python

  •

  BSD 2-Clause "Simplified" License

  •66 forks•11 star•1414 issues•44 pull requests•Updated Apr 13, 2026Apr 13, 2026

• omero-ms-zarr

  Public
  Experimental micro-service for implementing the Zarr spec over HTTP

  microserviceioomero+ 1

  microserviceioomerozarr

  Java

  •

  GNU General Public License v2.0

  •1212 forks•2121 stars•1717 issues•11 pull request•Updated Apr 13, 2026Apr 13, 2026