nf-core
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191 repositories
diseasemodulediscovery
PublicA pipeline for network-based disease module identification.mag
PublicAssembly and binning of metagenomeswebsite
Publicreferences
Publicnf-core/references is a bioinformatics pipeline that build references, for multiple use casescageseq
Publicbamtofastq
PublicConverts bam or cram files to fastq format and does quality control.test-datasets
Publicops
Publicseqinspector
PublicDedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc rep…raredisease
PublicCall and score variants from WGS/WES of rare disease patients.modules
Publicrnavar
Publiconcoanalyser
Publicsetup-nextflow
Publicstrict-syntax-health
Publicslackbot
Publictools
Publicrnaseq
Publicriboseq
Publicproteinfamilies
PublicGeneration and updating of protein familiesseqsubmit
Publicsetup-nf-test
Publicstats
Publicpacvar
Publiccellpainting
Publicnf-core-utils
Publicspatialxe
Publicmspepid
PublicThis pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can…hlatyping
Publicsarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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