Repositories list

• datadivr

  Public
  datadivr toolset

  Python

  •

  MIT License

  •22 forks•00 stars•88 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• MSI_hackathon

  Public
  modern version of MSI with python 3.11

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• ppi_layng

  Public
  pipeline that fuses PPI + Gene Ontology graphs into protein embeddings and 3D layouts (UMAP/PaCMAP with de-compression diagnostics) for large interaction netwo…

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• Exposome

  Public template
  This repository will contain the analyses for the human exposure network paper

  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• DataDiVR_WebApp

  Public
  JavaScript

  •

  MIT License

  •44 forks•1212 stars•1818 issues•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• Spatial_PPI_Elias

  Public
  Spatial Representation of the Protein-Protein Interaction Network based on Associated Localization Data

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• gathering_dvc

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• CartoGRAPHs

  Public
  HTML

  •

  MIT License

  •11 fork•2525 stars•22 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• EndotypY

  Public
  package formulation of endotyping pipeline

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•44 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• gathering_graphrag

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• sctools

  Public
  Collection of helper functions to make large scale single cell analysis more bearable

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•11 pull request•Updated Jan 16, 2026Jan 16, 2026

• apobex

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• gathering_reproducibility

  Public
  A repository for our gathering on reproducibility on the 2nd of December 2025

  Python

  •11 fork•00 stars•00 issues•11 pull request•Updated Dec 3, 2025Dec 3, 2025

• Grundtner_et_al_2025

  Public
  All the code used for analysis of vagus nerve data with MEFISTO

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 7, 2025Nov 7, 2025

• Englmaier_et_al_2025

  Public
  A repository for code associated with codonbias analyses presented in the manuscript

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 27, 2025Oct 27, 2025

• InfoWalkR

  Public
  package implementation of the MultiOme Paper

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 9, 2025Sep 9, 2025

• mefistotools

  Public
  Repository containing little helpers for streamlining analysis of mutliomics data with MEFISTO

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 17, 2025Jun 17, 2025

• netviz-iactive-

  Public
  PoC & tests for multilayer networks analysis

  Python

  •00 forks•11 star•22 issues•00 pull requests•Updated Apr 23, 2025Apr 23, 2025

• Radhouani_2025_scRNAseq

  Public
  scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2025Feb 13, 2025

• AutoCore

  Public
  AutoCore code

  Jupyter Notebook

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jan 31, 2025Jan 31, 2025

• Radhouani_2025_QuantSeq

  Public
  QuantSeq analysis from Radhouani et al., 2025, Science Immunology.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2025Jan 20, 2025

• SA_bone_marrow_scRNAseq

  Public
  scRNA-seq analysis for Radhouani et al, Science Immunology, 2025.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2025Jan 19, 2025

• SA_bone_marrow_QuantSeq

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2025Jan 19, 2025

• rgb4k

  Public
  this about color rgb rainbow max experience force lumination

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2024Nov 17, 2024

• Neuwirth_Malzl_et_al_2024

  Public
  Code repository for all analyses shown in Neuwirth and Malzl et al. 2024

  Jupyter Notebook

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 5, 2024Nov 5, 2024

• MultiOmeExplorer

  Public
  The shiny app for detailed data exploration complementing Buphamalai et.al.

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 21, 2024Oct 21, 2024

• MultiOme

  Public
  Network-based project to explore gene connectivity through biological scales

  HTML

  •

  MIT License

  •55 forks•2323 stars•11 issue•00 pull requests•Updated Oct 21, 2024Oct 21, 2024

• mutsigintsKit

  Public
  Functions for the mutsigints project.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2024Sep 15, 2024

• mutsigints

  Public
  Interactions of mutational signatures and cancer states

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• Grundtner_et_al_2024

  Public
  All the code used for data analysis with MEFISTO

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2024Jul 18, 2024