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    • A pipeline to build a PPanGGoLiN pangenome database from any source of genomes.
      Nextflow
      MIT License
      0001Updated Apr 30, 2026Apr 30, 2026
    • MicroScope Platform User Documentation
      6300Updated Apr 24, 2026Apr 24, 2026
    • Predict metabolic networks at pangenome scale
      Nextflow
      MIT License
      0100Updated Apr 22, 2026Apr 22, 2026
    • Build a partitioned pangenome graph from microbial genomes
      Python
      Other
      29298121Updated Apr 20, 2026Apr 20, 2026
    • netsyn

      Public
      NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.
      Python
      Other
      21000Updated Apr 15, 2026Apr 15, 2026
    • A tool to dump a part of the data of MetaCyc into a SQL file to be loaded in a relational database schema.
      Common Lisp
      Other
      0000Updated Apr 13, 2026Apr 13, 2026
    • Python
      Other
      0002Updated Apr 9, 2026Apr 9, 2026
    • Given a set of KEGG orthology group identifiers, identify the KEGG modules whose definition is satisfied
      Rust
      0000Updated Apr 8, 2026Apr 8, 2026
    • pan2met

      Public
      Python
      Other
      0000Updated Mar 30, 2026Mar 30, 2026
    • Test data to be used for automated testing with the pangbank pipeline.
      0000Updated Mar 13, 2026Mar 13, 2026
    • PANORAMA

      Public
      PANORAMA Project
      Python
      Other
      0603Updated Feb 16, 2026Feb 16, 2026
    • Command-line tool for retrieving pangenomes using the PanGBank API.
      Python
      Other
      1200Updated Feb 5, 2026Feb 5, 2026
    • metacoco

      Public
      METAbolism COmpletion for microbial COmmunities
      Python
      GNU General Public License v3.0
      0000Updated Jan 23, 2026Jan 23, 2026
    • CAESAR

      Public
      Python
      0000Updated Jan 12, 2026Jan 12, 2026
    • A jupyter-book corresponding to PANORAMA publication.
      Jupyter Notebook
      1200Updated Dec 10, 2025Dec 10, 2025
    • Some tutorials for PanGBank
      Jupyter Notebook
      0110Updated Nov 27, 2025Nov 27, 2025
    • Dataset repository for PANORAMA GitHub test workflow
      Other
      0000Updated Oct 3, 2025Oct 3, 2025
    • ASMC

      Public
      ASMC is a precision tool for deciphering the amino acid diversity that composes the active site of a given homologous protein family.
      Python
      Other
      2600Updated Apr 3, 2025Apr 3, 2025
    • asmc_2016

      Public
      ASMC code from de Melo-Minardi et al. (2010) [doi: 10.1093/bioinformatics/btq595], updated in 2016.
      Shell
      Other
      0000Updated Apr 16, 2024Apr 16, 2024
    • Conda recipes for the bioconda channel.
      Shell
      MIT License
      3.9k000Updated Feb 13, 2023Feb 13, 2023
    • phigaro

      Public
      Phigaro is a scalable command-line tool for predicting phages and prophages
      HTML
      MIT License
      15000Updated Apr 28, 2022Apr 28, 2022
    • PlaScope

      Public
      :microscope: :o: Plasmid exploration of bacterial genomes
      Roff
      GNU General Public License v3.0
      42631Updated Mar 2, 2022Mar 2, 2022
    • C
      Other
      0461Updated Dec 17, 2021Dec 17, 2021
    • tenacity

      Public
      Retrying library for Python
      Python
      Apache License 2.0
      323100Updated Mar 18, 2021Mar 18, 2021
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