Repositories list

• spatialmatch

  Public
  Figures and code for ABM spatial matching paper

  TeX

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• gransimg

  Public
  C program to export GranSim TIFF image output

  C

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• optimctrl

  Public
  Accepted manuscript to submit to NACO rewritten in LaTeX instead of Microsoft Word

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 8, 2025Sep 8, 2025

• tbmolbio

  Public
  TB example microarray analysis for Cameron

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• gsim

  Public
  ImageJ2 plugin to convert GranSim generated images into microscopy TIF images

  Java

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  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2024May 7, 2024

• calipro-lhs-vs-abc-smc

  Public
  Calibration methods to fit parameters within complex biological models

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 3, 2023Oct 3, 2023

• colony-counting

  Public
  Obtain CFU counts using image processing with Fiji and CellProfiler, and visualize dose-response relationships across drug concentrations using R

  R

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  Creative Commons Zero v1.0 Universal

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 27, 2023Jun 27, 2023