Repositories list

• BERIL-research-observatory

  Public
  BERIL Research Observatory - Exploring microbial ecology with the KBase Data Lakehouse

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •66 forks•1313 stars•1313 issues•1818 pull requests•Updated May 4, 2026May 4, 2026

• CEPHplaypen

  Public
  Futzing around with CEPH investigations

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• cdm_tool_skeleton

  Public
  Template skeleton for CTS (CDM Task Service) bioinformatics tool wrappers

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• cdm_bakta

  Public
  CTS job wrapper for Bakta bacterial genome annotation

  Dockerfile

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• cdm_kofamscan

  Public
  CTS job wrapper for KofamScan KEGG KO annotation

  Dockerfile

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• cdm_mmseqs2

  Public
  CTS job wrapper for MMseqs2 sequence clustering

  Dockerfile

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 18, 2026Apr 18, 2026

• narrative_llm_agent

  Public
  A set of tools to use LLMs to help build and execute a KBase Narrative workflow.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•1111 issues•22 pull requests•Updated Mar 13, 2026Mar 13, 2026

• kbase-security-dashboard

  Public
  A dashboard for KBase security

  Python

  •

  MIT License

  •00 forks•00 stars•11 issue•55 pull requests•Updated Mar 1, 2026Mar 1, 2026

• vaast-app

  Public
  VAAST: Visual AI Assistant SynBio Toolkits

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• opal-orchestrator

  Public
  OPAL Orchestration Chatbot - AI-powered cross-lab research planning for DOE national laboratories

  Python

  •00 forks•00 stars•00 issues•33 pull requests•Updated Feb 9, 2026Feb 9, 2026

• kbase-ui-components

  Public
  KBase-created React components for usage in kbase uis.

  TypeScript

  •

  MIT License

  •11 fork•11 star•00 issues•33 pull requests•Updated Jan 21, 2026Jan 21, 2026

• kbase-ui-lib

  Public
  TypeScript

  •

  MIT License

  •00 forks•11 star•00 issues•33 pull requests•Updated Jan 21, 2026Jan 21, 2026

• cdm_jupyterlab_brand_extension

  Public
  Example Jupyter extension providing custom branded logos

  Jupyter Notebook

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2025Nov 20, 2025

• CDM_Tasks_jplfaria

  Public
  To make it easy to share progress on CDM related tasks

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• KBase_CDM_Ontologies

  Public
  KBase CDM Ontologies Pipeline - Containerized pipeline for processing and merging biological ontologies at scale

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• cdm-ts-plugin-template

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 9, 2025Jul 9, 2025

• security_dashboard

  Public
  security_dashboard

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 7, 2025Mar 7, 2025

• kbase-chat-assistant

  Public
  KBase help chat assistant

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2025Mar 3, 2025

• kbaseincubator.github.io

  Public
  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 21, 2025Feb 21, 2025

• catalog_test_module

  Public
  A repository used for unit tests of the catalog

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• cdm-jupyter-ai-cborg

  Public
  Tailored Jupyter-AI Package with CBorg Integration

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 31, 2024Oct 31, 2024

• kb_unicycler

  Public
  Unicycler wrapper

  Python

  •

  MIT License

  •1616 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2024Oct 29, 2024

• cdm-prototype

  Public
  Recording work done as part of exploring a prototype for the KBase Central Data Model

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 16, 2024Jul 16, 2024

• kbase-mock-services

  Public
  TypeScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 23, 2024Jun 23, 2024

• cdm-prototype-spark

  Public
  Spark Docker images for running on KBase Rancher

  00 forks•00 stars•00 issues•22 pull requests•Updated May 7, 2024May 7, 2024

• test-build

  Public
  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2024May 7, 2024

• .github

  Public
  Shell

  •

  MIT License

  •66 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2024May 7, 2024

• kbase-integration-tests

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• kbase-ds-widget-tool

  Public
  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 18, 2024Apr 18, 2024

• eapearsonWidgetTest22

  Public archive
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2024Feb 2, 2024