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    131 repositories

    • Network_modeling_multimodal_v003

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • Network_modeling_vNF_002

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • OncoLearn

      Public
      Cancer Biomarker Discovery
      Jupyter Notebook
      •
      MIT License
      •6•7•8•0•Updated Mar 15, 2026Mar 15, 2026

    • RAIDers

      Public
      RAIDers
      Jupyter Notebook
      •
      MIT License
      •2•5•0•0•Updated Mar 13, 2026Mar 13, 2026

    • Network_modeling_v002

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • MethSmoothEval

      Public
      Jupyter Notebook
      •
      MIT License
      •1•6•0•0•Updated Feb 26, 2026Feb 26, 2026

    • FedGen

      Public
      Federated Learning (FL) Infrastructure & Synthetic Data
      Python
      •
      MIT License
      •3•7•5•1•Updated Jan 23, 2026Jan 23, 2026

    • Haploblock_Clusters_ElixirBH25

      Public
      Elixir BioHackathon 2025 Project 4: Beyond beacons: Establishing genomic background in European and international biobanks
      Python
      •
      MIT License
      •2•6•0•0•Updated Jan 15, 2026Jan 15, 2026

    • omnigenome

      Public
      Pangenome & Genomic Cluster Modeling
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Jan 13, 2026Jan 13, 2026

    • FedViz

      Public
      Visual Analytics for Cross-Site Biomedical Data and Federated Model Evaluation
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Jan 10, 2026Jan 10, 2026

    • MuFFLe

      Public
      Knowledge structures for Multimodal Models
      Jupyter Notebook
      •
      MIT License
      •6•4•0•0•Updated Jan 9, 2026Jan 9, 2026

    • PRSAggretator

      Public
      Polygenic Risk Aggregation in common diseases and phenotypes
      Python
      •
      MIT License
      •1•2•0•0•Updated Jan 9, 2026Jan 9, 2026

    • FedPathHarmony

      Public
      FedPathHarmony: Federated Harmonization for Multi-Center Digital Pathology
      harmonizationdigital-pathologyfederated-learning
      harmonizationdigital-pathologyfederated-learningnvflare
      Python
      •
      MIT License
      •4•1•0•0•Updated Jan 9, 2026Jan 9, 2026

    • Med_SNP_Deconvolution

      Public
      Deconvolution of medically relevant SNPs
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2026Jan 9, 2026

    • FedProFit

      Public
      Protein modeling for combinatorial mutations
      Python
      •
      MIT License
      •1•1•0•0•Updated Jan 9, 2026Jan 9, 2026

    • HaploblocksBH25_manuscript

      Public
      TeX
      •0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • IsoSV

      Public
      Python
      •3•4•0•0•Updated Dec 2, 2025Dec 2, 2025

    • ODP_hackathon_supplemental_materials

      Public
      Supplemental Materials from the AWS ODP - NVIDIA Knowledge Graph Hackathon
      MIT License
      •0•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • GeNETwork

      Public
      Build a knowledge graph connecting variants, drugs, and clinical evidence to identify therapeutic opportunities (e.g. CIViC - Clinical Interpretations of Varian…
      Python
      •
      MIT License
      •0•2•0•1•Updated Nov 4, 2025Nov 4, 2025

    • BioGraphRAG

      Public
      Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPT…
      Python
      •
      MIT License
      •2•9•0•0•Updated Oct 10, 2025Oct 10, 2025

    • ClassiGraph

      Public
      Develop a graph neural network to integrate proteomic and genomic features for cancer subtype classification (e.g. CPTAC-2 and CPTAC-3 breast, colorectal, and o…
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Oct 9, 2025Oct 9, 2025

    • EasyGiraffe

      Public
      Simulating and validating multi-centric variant extraction with VG Giraffe.
      Python
      •
      MIT License
      •0•3•0•0•Updated Oct 6, 2025Oct 6, 2025

    • CNVision

      Public
      Python
      •
      MIT License
      •2•8•0•0•Updated Oct 5, 2025Oct 5, 2025

    • Model_Garbage_Collection

      Public
      Implement a system to prune erroneous model assertions in knowledge graphs derived from GNN and/or LLM models or agents.
      Python
      •
      MIT License
      •1•8•0•0•Updated Oct 5, 2025Oct 5, 2025

    • MIDAS

      Public
      Implement a system to combine existing knowledge graphs (e.g. DisGeNet) with primary datasets (e.g. TCGA, 1000 genomes)
      Python
      •
      MIT License
      •1•3•0•0•Updated Oct 3, 2025Oct 3, 2025

    • ECoGraph

      Public
      Build a knowledge graph integrating cancer genomics data to identify potential biomarkers and therapeutic targets (e.g. TCGA)
      Jupyter Notebook
      •
      MIT License
      •2•5•1•0•Updated Oct 3, 2025Oct 3, 2025

    • Human_Haploblock_Lengths

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated Oct 1, 2025Oct 1, 2025

    • Microbe_KG

      Public
      Develop a knowledge graph linking microbiome compositions to various diseases and health conditions (e.g. Human Microbiome Project HMP)
      MIT License
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • Brain_connect_KG

      Public
      Develop a knowledge graph linking brain connectivity data with neurological disorders to identify potential biomarkers (e.g. Human Connectome Project)
      MIT License
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • Mosaicome

      Public
      Shell
      •
      MIT License
      •3•13•0•0•Updated Sep 18, 2025Sep 18, 2025
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