Skip to content

@bmds-lab Biomedical Data Science group

Change the repository type filter

All

    Repositories list

    10 repositories

    • CRISPR-DA

      Public
      CRISPR-Cas9 sgRNA design across many genomes
      crispr-cas9science-researchgrna-design
      crispr-cas9science-researchgrna-design
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Dec 16, 2025Dec 16, 2025

    • Crackling-AWS

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•2•2•Updated Sep 11, 2025Sep 11, 2025

    • CRISPR_DeepEnsemble

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Feb 24, 2025Feb 24, 2025

    • Crackling-phased

      Public
      *HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
      crispr-cas9grna-sequencehaplotype
      crispr-cas9grna-sequencehaplotypegrna-designvariant-aware
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •7•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • CracklingPlusPlus

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•0•0•Updated Jun 24, 2024Jun 24, 2024

    • Crackling

      Public
      CRISPR, faster, better – The Crackling method for whole-genome target detection
      bioinformaticsspecificitycrispr-analysis
      bioinformaticsspecificitycrispr-analysiscrisprefficacycrispr-designissl
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •7•11•7•6•Updated Jan 11, 2024Jan 11, 2024

    • mm10db

      Public
      Whole-genome CRISPR target detection, implementing the method described in Sunagawa et al., "Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short…
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 7, 2019May 7, 2019

    • CRISPR-benchmark

      Public
      Supplementary data for "A Benchmark of Computational CRISPR-Cas9 Guide Design Methods"
      HTML
      •0•1•0•0•Updated Apr 18, 2019Apr 18, 2019

    • K562

      Public
      Identification of allele-specific CRISPR targets in the K562 cell line.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 16, 2018Nov 16, 2018

    • DMI

      Public
      Algorithm for module identification in biological networks
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 4, 2018Aug 4, 2018
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.