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    25 repositories

    • neurogap-khatGWAS

      Public
      Python
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • GWASpy

      Public
      GWAS QC, PCA, haplotype phasing, genotype imputation
      gwaspcaimputation
      gwaspcaimputationqcphasing
      Python
      •
      MIT License
      •5•20•0•0•Updated Mar 31, 2026Mar 31, 2026

    • gnomaf

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • gnomAD_v4_flagship_paper

      Public
      Scripts and figures for gnomAD v4 flagship paper
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • aou_gwas

      Public
      Python
      •2•14•4•1•Updated Mar 15, 2026Mar 15, 2026

    • microscopy_computational_tools

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•1•0•Updated Mar 11, 2026Mar 11, 2026

    • bge_analysis

      Public
      Jupyter Notebook
      •3•2•0•1•Updated Feb 26, 2026Feb 26, 2026

    • ALLSPICER

      Public
      R
      •
      Other
      •0•1•0•0•Updated Jan 23, 2026Jan 23, 2026

    • bge-toolkit

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • ukbb_pan_ancestry

      Public
      Analyses conducting GWAS across the UKBB diverse superpopulations
      Python
      •
      MIT License
      •25•65•14•27•Updated Oct 22, 2025Oct 22, 2025

    • lung_biobank_gwas

      Public
      Assemble comprehensive genetic maps of asthma, COPD, and their comorbidities.
      MIT License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • mixture_betas

      Public
      Fitting a mixture of betas, for work in Jacobs et al: https://www.biorxiv.org/content/10.1101/2024.09.09.612029v1
      Jupyter Notebook
      •0•0•0•0•Updated Aug 10, 2025Aug 10, 2025

    • neurogap-hypoxia

      Public
      Code for the NeuroGAP hypoxia adaptation project
      Python
      •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • ofc-data-processing

      Public
      Scripts and files used in the development of a polygenic score for orofacial clefting.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2025Jul 12, 2025

    • hgdp_tgp

      Public
      Jupyter Notebook
      •
      MIT License
      •6•53•2•0•Updated Jul 9, 2025Jul 9, 2025

    • gnomad_nc_constraint

      Public
      Python
      •4•9•2•0•Updated Mar 4, 2025Mar 4, 2025

    • hb_pipelines

      Public
      Python
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • CHARR

      Public
      Contamination from Homozygous Alternate Reference Reads
      Python
      •2•11•1•1•Updated Oct 31, 2023Oct 31, 2023

    • neurodev-pilot

      Public
      Code and data analysis repository for the phenotype and genetic analysis of data collected within the first year of NeuroDev
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 1, 2023May 1, 2023

    • neurodev-wave1

      Public
      Repository for NeuroDev analyses
      1•0•0•1•Updated Feb 3, 2023Feb 3, 2023

    • BroadIS

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • NeuroGAP

      Public
      Primary repository for efforts and analyses of the Neuropsychiatric Genetics in African Populations
      Python
      •1•1•0•0•Updated Mar 16, 2022Mar 16, 2022

    • GINGER_cloud

      Public
      MIT License
      •1•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • pca_projection

      Public
      R
      •
      MIT License
      •4•6•0•0•Updated Mar 26, 2021Mar 26, 2021

    • cromwell_google_setup

      Public
      Notes for setting up a cromwell server for google cloud
      0•5•0•0•Updated Aug 13, 2020Aug 13, 2020
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