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    • STORM movie analysis code
      Python
      9312231Updated Apr 6, 2026Apr 6, 2026
    • MERlin

      Public
      MERFISH decoding software
      Python
      MIT License
      322600Updated Aug 16, 2025Aug 16, 2025
    • Microscope control software
      Python
      Other
      7268171Updated Feb 13, 2025Feb 13, 2025
    • Analysis codes and scripts for chromatin of MOp
      Jupyter Notebook
      MIT License
      2310Updated Jan 11, 2025Jan 11, 2025
    • Jupyter Notebook
      51300Updated Mar 29, 2024Mar 29, 2024
    • Jupyter Notebook
      41500Updated Dec 19, 2022Dec 19, 2022
    • MATLAB
      0200Updated Oct 21, 2022Oct 21, 2022
    • Source codes and example scripts for chromatin tracing projects in Zhuang lab
      Jupyter Notebook
      MIT License
      82930Updated Jan 27, 2022Jan 27, 2022
    • Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
      MATLAB
      Other
      345041Updated Aug 1, 2021Aug 1, 2021
    • Jupyter Notebook
      MIT License
      1000Updated Apr 28, 2021Apr 28, 2021
    • Designs for 3D printed parts that were developed in the Zhuang Lab.
      OpenSCAD
      41100Updated Dec 2, 2020Dec 2, 2020
    • GUIs and functions for analyzing STORM data in MATLAB
      MATLAB
      613950Updated May 22, 2020May 22, 2020
    • Software for high-throughput, MERFISH-based CRISPR screening.
      MATLAB
      0000Updated May 6, 2019May 6, 2019
    • Software for high-throughput, image-based screening using MERFISH.
      Python
      0000Updated Oct 30, 2017Oct 30, 2017
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