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    14 repositories

    • storm-analysis

      Public
      STORM movie analysis code
      Python
      •93•122•3•1•Updated Apr 6, 2026Apr 6, 2026

    • MERlin

      Public
      MERFISH decoding software
      Python
      •
      MIT License
      •32•26•0•0•Updated Aug 16, 2025Aug 16, 2025

    • storm-control

      Public
      Microscope control software
      Python
      •
      Other
      •72•68•17•1•Updated Feb 13, 2025Feb 13, 2025

    • Chromatin_Analysis_MOp

      Public
      Analysis codes and scripts for chromatin of MOp
      Jupyter Notebook
      •
      MIT License
      •2•3•1•0•Updated Jan 11, 2025Jan 11, 2025

    • whole_mouse_brain_MERFISH_atlas_scripts_2023

      Public
      Jupyter Notebook
      •5•13•0•0•Updated Mar 29, 2024Mar 29, 2024

    • SpatialBrainAgingCell22

      Public
      Jupyter Notebook
      •4•15•0•0•Updated Dec 19, 2022Dec 19, 2022

    • Epigenomic_MERFISH

      Public
      MATLAB
      •0•2•0•0•Updated Oct 21, 2022Oct 21, 2022

    • Chromatin_Analysis_2020_cell

      Public
      Source codes and example scripts for chromatin tracing projects in Zhuang lab
      Jupyter Notebook
      •
      MIT License
      •8•29•3•0•Updated Jan 27, 2022Jan 27, 2022

    • MERFISH_analysis

      Public
      Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
      MATLAB
      •
      Other
      •34•50•4•1•Updated Aug 1, 2021Aug 1, 2021

    • BICCN_MOp_2021

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • 3D-printing

      Public
      Designs for 3D printed parts that were developed in the Zhuang Lab.
      OpenSCAD
      •4•11•0•0•Updated Dec 2, 2020Dec 2, 2020

    • matlab-storm

      Public
      GUIs and functions for analyzing STORM data in MATLAB
      MATLAB
      •61•39•5•0•Updated May 22, 2020May 22, 2020

    • MERFISH-based-CRISPR-screening

      Public
      Software for high-throughput, MERFISH-based CRISPR screening.
      MATLAB
      •0•0•0•0•Updated May 6, 2019May 6, 2019

    • MERFISH-based-screening

      Public
      Software for high-throughput, image-based screening using MERFISH.
      Python
      •0•0•0•0•Updated Oct 30, 2017Oct 30, 2017
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