Repositories list

• essential_scripts

  Public
  Essential Scripts utilized by members and collaborators of DSCoLab

  R

  •00 forks•00 stars•00 issues•66 pull requests•Updated May 1, 2026May 1, 2026

• ImmunoMicrobiome

  Public
  This repository contains the code and data related to the ImmunoMicrobiome project.

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• spatial_transcriptomics_colitis_analysis_2024

  Public

  UCSF-DSCOLAB/spatial_transcriptomics_colitis_analysis_2024’s past year of commit activity
  This repository contains the code necessary to reproduce the analyses and figures presented in our spatial transcriptomics colitis paper.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• vulcan_containers

  Public
  Singularity

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 2, 2026Apr 2, 2026

• vulcan_compass

  Public
  Python

  •00 forks•00 stars•00 issues•22 pull requests•Updated Mar 30, 2026Mar 30, 2026

• sicca_pipeline

  Public

  UCSF-DSCOLAB/sicca_pipeline’s past year of commit activity
  pipeline for running SICCA scRNA-seq analysis

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2026Mar 21, 2026

• data_processing_pipelines

  Public
  A repository to store the existing pipelines to process the various CoLabs datasets

  Nextflow

  •11 fork•22 stars•3838 issues•1010 pull requests•Updated Oct 16, 2025Oct 16, 2025

• vulcan_scviz

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• hackathon_primer

  Public
  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 7, 2025Aug 7, 2025

• pan_cancer_immune_archetypes

  Public
  Python

  •

  MIT License

  •33 forks•1212 stars•22 issues•00 pull requests•Updated Jul 31, 2025Jul 31, 2025

• dscobal

  Public
  dscolab dscobal

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 23, 2024Nov 23, 2024

• cyclone

  Public
  R

  •44 forks•33 stars•11 issue•00 pull requests•Updated Sep 17, 2024Sep 17, 2024

• COVID-dex

  Public
  Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated May 6, 2024May 6, 2024

• aarao_scripts

  Public
  Essential Scripts used by Arjun Rao

  Python

  •00 forks•22 stars•33 issues•00 pull requests•Updated Dec 27, 2022Dec 27, 2022

• magnen_et_al_2022

  Public
  The software and auxiliary files associated with the Mangen et.al (2022)

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2022May 5, 2022

• mujal_et_al_MonoMac_2021

  Public
  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 13, 2021Dec 13, 2021

• ipi_flow_population_name_standardization

  Public
  Script to extract standardized population names from Flow WSP files

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 10, 2021Aug 10, 2021

• combes_et_al_COVID_2020

  Public
  A repository containing code and files required to reproduce data published in Combes et.al. (2020)

  R

  •22 forks•22 stars•11 issue•00 pull requests•Updated Jul 7, 2021Jul 7, 2021

• BMS-225A

  Public
  Materials for BMS 225A workshop on reproducible research and data exploration

  R

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jan 5, 2021Jan 5, 2021