Repositories list

• kernel

  Public
  Perl

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• genome.survey

  Public
  General utilities for processing genomes

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• brc.parent

  Public
  Master project for SEEDtk java modules used by BV-BRC

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• p3.query

  Public
  BV-BRC query utilities

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• p3_cli

  Public
  BV-BRC command line interface scripts

  Perl

  •55 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• p3api.common

  Public
  Useful PATRIC utilities

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• p3api

  Public
  Java library for PATRIC DATA API

  Java

  •00 forks•00 stars•00 issues•11 pull request•Updated Mar 17, 2026Mar 17, 2026

• kmers.reps

  Public
  Java module for representative genomes

  Java

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 25, 2026Feb 25, 2026

• sequence

  Public
  Sequence-hashing utilities

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• basic

  Public
  Low-level shared SEED java library

  Java

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• shared

  Public
  Shared SEED java library

  Java

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• genome.download

  Public
  Commands for converting genomes to GTOs

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• kmers.hammer

  Public
  Utilities for processing thor-hammers

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• java.erdb

  Public
  ERDB Support for Java

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• java.config

  Public
  Java commands for project update and configuration

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• genome.changes

  Public
  COmmands for comparing feature characteristics in genome sets

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• dl4j.eval

  Public
  Deep learning system for annotation consistency

  Java

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 16, 2026Feb 16, 2026

• dl4j.decision

  Public
  Small DL4J library for RandomForest only

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• core

  Public
  CoreSEED Java Library

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• bins.generate

  Public
  New Metagenome Binning Algorithm

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 3, 2026Feb 3, 2026

• genome.blast

  Public
  BLAST utilities for SEEDtk

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• ncbi.utils

  Public
  Java Utilities for accessing NCBI

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• nano-graphrag

  Public
  A simple, easy-to-hack GraphRAG implementation

  Python

  •

  MIT License

  •410410 forks•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• rna.erdb

  Public
  Maintenance and analysis utilities for the RNA Seq database

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• excel.utils

  Public
  Java utilities for reading and writing excel spreadsheets

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• io.template

  Public
  Text generation utilities

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• bvbrc-mcp-server

  Public
  Working copy of Clark's MCP server

  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jan 12, 2026Jan 12, 2026

• cli.utils

  Public
  Applications that use PATRIC command-line utilities

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 12, 2026Jan 12, 2026

• dl4j.utils

  Public
  Utility classes related to the dl4j family of products

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 12, 2026Jan 12, 2026

• kmers.anno

  Public
  Kmer-based annotation engine

  Java

  •00 forks•00 stars•00 issues•11 pull request•Updated Jan 12, 2026Jan 12, 2026