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    • WebCM

      Public
      WebCM is a web platform used to develop and run bacterial simulations
      JavaScript
      MIT License
      1010Updated Apr 22, 2026Apr 22, 2026
    • popdyn

      Public
      Population dynamics
      Jupyter Notebook
      1000Updated Jul 18, 2025Jul 18, 2025
    • LOICA

      Public
      Logical Operators for Integrated Cell Algorithms
      Jupyter Notebook
      MIT License
      36120Updated Jun 12, 2025Jun 12, 2025
    • PUDU

      Public
      Protocol Unified Design Unit
      Python
      MIT License
      16191Updated Oct 9, 2024Oct 9, 2024
    • brain

      Public
      Reservoir computing with coupled genetic oscillators
      MATLAB
      BSD 2-Clause "Simplified" License
      0100Updated Aug 2, 2024Aug 2, 2024
    • Napari plugin for quantitative population dynamics analysis
      Python
      MIT License
      1000Updated Apr 4, 2024Apr 4, 2024
    • GPU-accelerated multicellular modelling framework
      Python
      Other
      55101Updated Feb 23, 2024Feb 23, 2024
    • GenePhLo

      Public
      Phase-based genetic logic circuit simulation
      0100Updated Feb 15, 2024Feb 15, 2024
    • FluoPi

      Public
      Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.
      Jupyter Notebook
      Other
      162623Updated Dec 30, 2023Dec 30, 2023
    • C++
      MIT License
      0000Updated Aug 13, 2023Aug 13, 2023
    • Informt
      Jupyter Notebook
      0100Updated Aug 8, 2023Aug 8, 2023
    • .github

      Public
      Organization profile
      MIT License
      0000Updated Mar 9, 2023Mar 9, 2023
    • MiNuD

      Public
      Mitochondrial Nucleoids Distribution
      Python
      MIT License
      0050Updated Nov 28, 2022Nov 28, 2022
    • LOICA.jl

      Public
      LOICA but Julia
      Julia
      MIT License
      1100Updated Aug 9, 2022Aug 9, 2022
    • Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles
      Jupyter Notebook
      MIT License
      0040Updated Jul 25, 2022Jul 25, 2022
    • killifish

      Public
      CellModeller model files, analysis notebooks, and scripts for modeling annual killifish.
      Jupyter Notebook
      0200Updated Jun 6, 2022Jun 6, 2022
    • Jupyter Notebook
      0000Updated Feb 12, 2021Feb 12, 2021
    • Corchea-1

      Public
      Paper-fluidic open science hardware for research, teaching and more
      Jupyter Notebook
      1000Updated Jan 6, 2021Jan 6, 2021
    • pyrite

      Public
      Analysis code for studying bacterial colony formation on pyrite
      0000Updated Aug 18, 2020Aug 18, 2020
    • Landing page for Corchea's project
      HTML
      0000Updated May 21, 2020May 21, 2020
    • Corchea

      Public
      Hardware control and analysis for Corchea paper flow device
      Jupyter Notebook
      GNU General Public License v3.0
      0000Updated Jan 4, 2020Jan 4, 2020
    • Statistical physics analysis of CellModeller simulations
      Python
      GNU General Public License v3.0
      0100Updated Aug 25, 2019Aug 25, 2019
    • Jupyter Notebook
      1000Updated Nov 5, 2018Nov 5, 2018
    • final-project-ptbravo created by GitHub Classroom
      Python
      0000Updated Jun 30, 2018Jun 30, 2018
    • final-project-ajananias created by GitHub Classroom
      0000Updated Jun 27, 2018Jun 27, 2018
    • final-project-Prosimio created by GitHub Classroom
      0000Updated Jun 4, 2018Jun 4, 2018
    • final-project-cghernandez created by GitHub Classroom
      0000Updated Jun 4, 2018Jun 4, 2018
    • piv

      Public
      Particle image velocimetry for tracking movement and growth of cells.
      Jupyter Notebook
      1100Updated Apr 6, 2018Apr 6, 2018
    • Inverters

      Public
      Code and notebooks to analyze data from plate reader assays which involves proteic and CRISPRi inverters
      Jupyter Notebook
      MIT License
      1000Updated Nov 8, 2017Nov 8, 2017
    • Tutorials

      Public
      Programming, image processing, data analysis, and other tutorials for the lab
      Jupyter Notebook
      0000Updated Aug 28, 2017Aug 28, 2017
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