Repositories list

• argprep

  Public
  Snakemake pipeline for generating SINGER input files from whole genome alignment .maf files.

  Python

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•88 stars•00 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• argtest

  Public
  Scripts and tools for testing ARGs

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2026Apr 25, 2026

• rilab.github.io

  Public
  Ross-Ibarra Lab at UC Davis

  HTML

  •88 forks•22 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• statements

  Public
  Successful Job Applications and Grants

  Other

  •150150 forks•841841 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• rilab_template

  Public
  LaTeX template for manuscripts

  BibTeX Style

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 25, 2025Aug 25, 2025

• breeding_sims

  Public
  TeX

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 2, 2024Jul 2, 2024

• lab-docs

  Public
  The Ross-Ibarra's lab documentation

  HTML

  •55 forks•2626 stars•33 issues•00 pull requests•Updated Aug 4, 2022Aug 4, 2022

• mop

  Public
  Simple tool for capturing alignment regions with sufficient quality for genotyping.

  Python

  •

  GNU General Public License v3.0

  •33 forks•2222 stars•11 issue•00 pull requests•Updated Aug 20, 2021Aug 20, 2021

• BGS_sims

  Public
  Simulation of background selection in non equilibrium populations

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 31, 2019May 31, 2019

• IAmSam

  Public
  forward simulation of indel associated mutation model

  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2019May 5, 2019

• BGS_demo

  Public
  TeX

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 11, 2019Apr 11, 2019

• discoal

  Public
  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population split…

  TeX

  •

  GNU General Public License v3.0

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2019Mar 20, 2019

• synthetic_load

  Public
  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 8, 2019Feb 8, 2019

• PHS_statistic

  Public
  code to calculate pairwise haplotype statistic

  Perl

  •11 fork•11 star•00 issues•00 pull requests•Updated Jan 23, 2019Jan 23, 2019

• beissinger_ms

  Public
  TeX

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2018Dec 9, 2018

• AJB_MutationalTargetSize_GenomeSize

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 3, 2018Jan 3, 2018

• Policies

  Public
  Lab policies and operating procedures

  1414 forks•00 stars•00 issues•00 pull requests•Updated Dec 7, 2017Dec 7, 2017

• fwdpy11

  Public
  Forward-time simulation in Python using fwdpp

  C++

  •

  GNU General Public License v3.0

  •66 forks•00 stars•00 issues•00 pull requests•Updated Aug 2, 2017Aug 2, 2017

• ZeaBigData.github.io

  Public
  web site of zea big data

  CSS

  •

  MIT License

  •1212 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2017Feb 9, 2017

• pdf2pdf

  Public
  does the magical pdf-to-pdf conversion popular in academic journal submission sites

  Shell

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Sep 27, 2016Sep 27, 2016

• bis101

  Public
  bis101

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 9, 2016Aug 9, 2016

• fruitcase

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 16, 2016Jul 16, 2016

• methylation

  Public
  HTML

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 14, 2016Jul 14, 2016

• Maize-Teo-Scripts

  Public
  R

  •88 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2015Dec 2, 2015

• NSF_PRFB_PlantGenome

  Public
  Application for NSF Post-doc fellowship

  TeX

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 3, 2015Nov 3, 2015

• historical_genomics

  Public
  maize historical genomics

  R

  •44 forks•55 stars•00 issues•00 pull requests•Updated Sep 25, 2015Sep 25, 2015

• peachy

  Public
  peach & almond domestication

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 25, 2015Aug 25, 2015

• ProgenyArray

  Public
  An R package to work with half-sib progeny array data

  R

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2015Jul 20, 2015

• bneck

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2015Jun 18, 2015

• tasselr

  Public
  Some beta interfaces to Tassel's GBS data on HDF5

  R

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2015May 15, 2015