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    • PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To cont…
      Python
      GNU General Public License v3.0
      2138201Updated Apr 21, 2026Apr 21, 2026
    • Python data loader for PhysiCell digital snapshots
      Python
      BSD 3-Clause "New" or "Revised" License
      16900Updated Apr 5, 2026Apr 5, 2026
    • Repo to host platform-specific libraries for intracellular solvers
      Python
      1000Updated Feb 19, 2026Feb 19, 2026
    • vis3D

      Public
      Options to visualize data from a 3D model
      Python
      2000Updated Jan 29, 2026Jan 29, 2026
    • User Guide for PhysiCell Studio. Please report issues with the Guide in https://github.com/PhysiCell-Tools/Studio-Guide/issues.
      Creative Commons Zero v1.0 Universal
      1700Updated Dec 15, 2025Dec 15, 2025
    • pcstudio

      Public
      pcstudio is a repo for the online nanoHUB app
      C++
      0100Updated Jul 2, 2025Jul 2, 2025
    • Help build a nanoHUB app for a PhysiCell model with a Studio GUI
      0000Updated Aug 7, 2023Aug 7, 2023
    • Useful Python scripts related to PhysiCell
      Python
      2000Updated Sep 29, 2022Sep 29, 2022
    • Template Jupyter notebook for PhysiCell-powered nanoHUB apps
      C++
      BSD 3-Clause "New" or "Revised" License
      7701Updated Jun 23, 2022Jun 23, 2022
    • Provides a Unity scene explorer for PhysiCell data
      C#
      1001Updated Feb 1, 2022Feb 1, 2022
    • Fury is a Python library for (3-D) scientific visualization. This repo provides utility scripts for using it for PhysiCell output data.
      Python
      1000Updated Jul 21, 2021Jul 21, 2021
    • Simple examples showing how DAPT can be used with PhysiCell.
      C++
      BSD 3-Clause "New" or "Revised" License
      0100Updated Apr 30, 2021Apr 30, 2021
    • Assorted scripts for use on nanoHUB
      Shell
      BSD 3-Clause "New" or "Revised" License
      1000Updated Oct 9, 2019Oct 9, 2019
    • Matlab data loader
      BSD 3-Clause "New" or "Revised" License
      0200Updated Sep 7, 2019Sep 7, 2019
    • Simple cutaway POV-Ray
      C++
      BSD 3-Clause "New" or "Revised" License
      4301Updated Sep 6, 2019Sep 6, 2019
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