Repositories list

• pattyfam_compute

  Public
  PATRIC family compute code

  Perl

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2024Nov 4, 2024

• p3_auth

  Public
  authentication

  Perl

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jun 18, 2024Jun 18, 2024

• rast_server

  Public
  RAST server code

  Makefile

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 19, 2023Jul 19, 2023

• mauve-viewer

  Public
  A Whole Genome Alignment Visualization Tool for the Web

  JavaScript

  •

  MIT License

  •66 forks•4444 stars•44 issues•66 pull requests•Updated Apr 29, 2023Apr 29, 2023

• bootstrap

  Public
  Perl

  •

  MIT License

  •1414 forks•11 star•00 issues•00 pull requests•Updated Feb 6, 2023Feb 6, 2023

• PATRIC-distribution

  Public
  For distributing patric related code

  HTML

  •44 forks•2727 stars•1818 issues•00 pull requests•Updated Dec 19, 2022Dec 19, 2022

• p3_rnaseq

  Public
  PATRIC RNAseq application

  Perl

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 1, 2022Dec 1, 2022

• p3_docs

  Public
  This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.

  hacktoberfest

  hacktoberfest

  Python

  •2020 forks•33 stars•00 issues•00 pull requests•Updated Nov 9, 2022Nov 9, 2022

• p3_web

  Public
  The PATRIC Web Application

  JavaScript

  •

  MIT License

  •1717 forks•22 stars•44 issues•00 pull requests•Updated Nov 1, 2022Nov 1, 2022

• solrjs

  Public
  Simple NodeJS Solr Client

  JavaScript

  •44 forks•00 stars•00 issues•00 pull requests•Updated Aug 26, 2021Aug 26, 2021

• hotmap

  Public
  WebGL Heatmap Viewer for Big Data and Bioinformatics

  JavaScript

  •

  MIT License

  •77 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2021Jan 5, 2021

• p3_module_template

  Public template
  Template repository for PATRIC release engineered modules.

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2020Dec 16, 2020

• image_build

  Public
  Image maintenance stuff for PATRIC3

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2020May 21, 2020

• bamclipper

  Public
  Remove primer sequence from BAM alignments by soft-clipping

  Perl

  •

  MIT License

  •1010 forks•00 stars•00 issues•00 pull requests•Updated May 19, 2020May 19, 2020

• logos

  Public
  a repository of logos

  PostScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2020Apr 21, 2020

• freebayes

  Public
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  C++

  •

  MIT License

  •275275 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2019Dec 17, 2019

• mic_prediction

  Public
  Code for doing MIC predictions on genomes

  Python

  •33 forks•4242 stars•00 issues•00 pull requests•Updated Dec 5, 2019Dec 5, 2019

• containers

  Public
  Specifications for PATRIC container builds

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 4, 2019Sep 4, 2019

• procedures

  Public
  Contains documented procedures for things operational

  22 forks•11 star•00 issues•00 pull requests•Updated Jul 12, 2019Jul 12, 2019

• p3_deployment

  Public
  Perl

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 21, 2019Jun 21, 2019

• homology_service

  Public
  Perl

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 21, 2019Jun 21, 2019

• patric_solr

  Public archive
  manages PATRIC Solr schema

  Shell

  •

  MIT License

  •22 forks•55 stars•00 issues•00 pull requests•Updated Apr 8, 2019Apr 8, 2019

• app_service

  Public
  Application execution service.

  Perl

  •1717 forks•00 stars•00 issues•00 pull requests•Updated Apr 5, 2019Apr 5, 2019

• p3_read_mapping

  Public
  Repo for PATRIC read mapping tools

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 5, 2019Mar 5, 2019

• mauve_viewer

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2018Sep 10, 2018

• p3_user_service

  Public
  Makefile

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jul 12, 2018Jul 12, 2018

• pepr

  Public
  Phylogenomic Estimation with progressive Refinement

  Java

  •22 forks•00 stars•00 issues•11 pull request•Updated Dec 19, 2017Dec 19, 2017

• p3_solr

  Public archive
  contains modified solr code plus plugins

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2017Nov 4, 2017

• p3_api_service

  Public
  Makefile

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2017Oct 10, 2017

• p3_web_service

  Public
  Makefile

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 2, 2017Oct 2, 2017