Repositories list

• training

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1111 forks•1515 stars•6262 issues•77 pull requests•Updated May 2, 2026May 2, 2026

• omero-vitessce

  Public
  OMERO.web plugin for the Vitessce multimodal data viewer.

  omeroomero-webmultimodal+ 4

  omeroomero-webmultimodalspatial-transcriptomicsvitesscespatial-omicsnfdi4bioimage

  Python

  •

  GNU Affero General Public License v3.0

  •11 fork•1313 stars•00 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• SlideInsight

  Public
  A collection of notebooks for gaining insights into presentation slides through multimodal AI models.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •11 fork•44 stars•99 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• FAIR-IO

  Public
  Shell

  •

  Creative Commons Attribution 4.0 International

  •33 forks•00 stars•11 issue•00 pull requests•Updated Mar 4, 2026Mar 4, 2026

• omero-arc-activities

  Public
  This repository collects, links and describes omero-arc interoperability activities.

  Creative Commons Attribution 4.0 International

  •00 forks•00 stars•55 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• BioHackathon24

  Public
  Repository for de.NBI24 BioHackathon project: "Increasing interoperability of bioimage dataset resources"

  TeX

  •

  GNU General Public License v3.0

  •22 forks•00 stars•11 issue•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• sparql-examples

  Public
  A set of SPARQL examples that are used in different SIB resources

  HTML

  •

  Other

  •3636 forks•00 stars•00 issues•00 pull requests•Updated Jan 23, 2026Jan 23, 2026

• deNBI-hackathon-2025-OMERO

  Public
  Repo for collecting matherial, tasks and issues for the OMERO deNBI Hackaton (2025)

  44 forks•22 stars•1010 issues•11 pull request•Updated Nov 24, 2025Nov 24, 2025

• NFDI4BI-KG

  Public
  Repository for the NFDI4BIOIMAGE Knowledge Graph

  Python

  •

  MIT License

  •11 fork•11 star•77 issues•00 pull requests•Updated Oct 21, 2025Oct 21, 2025

• jupyterhub-bioimage-env

  Public
  Dockerfile

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• ul_rdm_git_demo

  Public
  The Unlicense

  •88 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2025May 15, 2025

• LEO

  Public
  Linking Electronic Lab Notebooks and other sources with OMERO objects

  nfdi4bioimage

  nfdi4bioimage

  JavaScript

  •

  MIT License

  •00 forks•33 stars•55 issues•00 pull requests•Updated Apr 14, 2025Apr 14, 2025

• n4bi-repo-challenge-2025

  Public
  Svelte

  •

  BSD 3-Clause "New" or "Revised" License

  •66 forks•44 stars•00 issues•44 pull requests•Updated Mar 31, 2025Mar 31, 2025

• omero-kg-benchmark

  Public
  Repository for subproject P4 "Endpoint Drafting and Testing", part of project "Increasing interoperability of bioimage dataset resources"at the 2024 deNBI BioHa…

  benchmarkingrdfomero+ 4

  benchmarkingrdfomerosparql-querysparql-endpointsbioimagingvirtual-knowledge-graph

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•22 issues•00 pull requests•Updated Feb 3, 2025Feb 3, 2025

• Postcards-2024

  Public
  Illustrations were contracted by the Heinrich Heine University of Düsseldorf in the frame of the consortium NFDI4BIOIMAGE from Henning Falk for the purpose of e…

  rdmnfdinfdi4bioimage

  rdmnfdinfdi4bioimage

  Creative Commons Attribution 4.0 International

  •11 fork•88 stars•00 issues•00 pull requests•Updated Jan 14, 2025Jan 14, 2025

• nfdi_search_engine

  Public
  search engine for the NFDI4BIOIMAGE materials(Docker Version)

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•11 star•1111 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025

• search_engine

  Public
  search engine for the NFDI4BIOIMAGE materials

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•22 stars•1616 issues•00 pull requests•Updated Oct 8, 2024Oct 8, 2024

• irods_k8s

  Public
  PLpgSQL

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 4, 2024Sep 4, 2024

• licensing

  Public
  00 forks•00 stars•11 issue•00 pull requests•Updated Jul 11, 2024Jul 11, 2024

• napari-plugin-template

  Public
  MIT License

  •00 forks•00 stars•33 issues•00 pull requests•Updated May 28, 2024May 28, 2024

• ome-ld

  Public
  Linked Data support for the OME Model

  Python

  •33 forks•00 stars•00 issues•00 pull requests•Updated May 25, 2024May 25, 2024

• omero-tabbles

  Public
  OMERO.web script to create Annotations in OMERO based on Tags from Tabbles

  omeroomero-scripts

  omeroomero-scripts

  Python

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 23, 2024Apr 23, 2024

• git-demo-dataweek2024

  Public
  This repository serves as playground for the DataWeek Leipzig 2024

  The Unlicense

  •88 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2024Apr 15, 2024

• omero-scripts

  Public
  OMERO.web script to convert grey scale label images into OMERO Rois

  omeroomero-scripts

  omeroomero-scripts

  Python

  •

  GNU General Public License v2.0

  •11 fork•33 stars•00 issues•11 pull request•Updated Apr 10, 2024Apr 10, 2024

• Cologne-Hackathon-2023

  Public
  Repository for documentation during and of the NFDI4Bioimage - TA3-Hackathon - UoC-2023 (in short: "Cologne Hackathon").

  Creative Commons Attribution 4.0 International

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 22, 2024Feb 22, 2024

• BHG2023-OMERO-ARC

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •44 forks•11 star•00 issues•00 pull requests•Updated Feb 5, 2024Feb 5, 2024