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    39 repositories

    • SORBET

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • Locat-paper

      Public
      Scripts and results used for the Locat paper
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • Locat

      Public
      Locat
      Python
      •
      MIT License
      •1•2•1•0•Updated Apr 7, 2026Apr 7, 2026

    • MOSAIC

      Public
      HTML
      •
      Other
      •0•1•0•0•Updated Mar 26, 2026Mar 26, 2026

    • bipca

      Public
      Biwhitened PCA
      Jupyter Notebook
      •0•15•1•0•Updated Mar 18, 2026Mar 18, 2026

    • bipca-experiment

      Public
      Python
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • DiCoLo

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • LocalizedMarkerDetector

      Public
      R
      •
      Other
      •0•1•1•0•Updated Feb 11, 2026Feb 11, 2026

    • ViralDetection

      Public
      This pipeline processes sequencing data to identify viral integrations.
      Shell
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • DysonEqualizer

      Public
      Python
      •
      MIT License
      •0•1•1•0•Updated Oct 16, 2025Oct 16, 2025

    • SIMVI

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•15•0•0•Updated Jun 27, 2025Jun 27, 2025

    • Y-SCORCH_manuscript

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • GeneTrajectory-python

      Public
      Python implementation of Gene Trajectory
      Jupyter Notebook
      •
      MIT License
      •2•30•3•0•Updated Sep 4, 2024Sep 4, 2024

    • GeneTrajectory

      Public
      R implementation of GeneTrajectory
      R
      •9•69•14•0•Updated Apr 5, 2024Apr 5, 2024

    • GeneTrajectory-paper

      Public
      0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • ALRA

      Public
      Imputation method for scRNA-seq based on low-rank approximation
      dropoutimputationscrna-seq
      dropoutimputationscrna-seqsvdmatrix-completion
      R
      •
      MIT License
      •24•80•19•1•Updated Dec 14, 2023Dec 14, 2023

    • SpectralNet

      Public
      Deep network that performs spectral clustering
      Python
      •
      MIT License
      •103•329•14•0•Updated Feb 23, 2023Feb 23, 2023

    • GTF

      Public
      0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • GT

      Public
      R
      •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

    • stg

      Public
      Python
      •
      MIT License
      •24•1•0•0•Updated Feb 18, 2022Feb 18, 2022

    • ALRA-paper

      Public
      R
      •6•9•1•0•Updated Oct 31, 2021Oct 31, 2021

    • FIt-SNE

      Public
      Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
      visualizationbig-datat-sne
      visualizationbig-datat-snefast-algorithm
      C++
      •
      Other
      •111•609•18•2•Updated Sep 13, 2021Sep 13, 2021

    • pyFIt-SNE

      Public
      Python Wrapper for FIt-SNE
      C++
      •
      Other
      •11•45•1•1•Updated May 11, 2021May 11, 2021

    • DAseq

      Public
      R
      •
      MIT License
      •5•40•13•0•Updated Apr 5, 2021Apr 5, 2021

    • DAseq-paper

      Public
      R
      •1•3•0•0•Updated Mar 12, 2021Mar 12, 2021

    • Scripts_Roulis_et_al_2020

      Public
      R
      •1•1•1•0•Updated May 26, 2020May 26, 2020

    • batchEffectRemoval2020

      Public
      Python
      •0•1•0•0•Updated Apr 16, 2020Apr 16, 2020

    • RotationScheduler

      Public
      R
      •1•0•0•0•Updated Apr 13, 2020Apr 13, 2020

    • Pembro-Brain-Met-Trial-Nanostring

      Public
      0•0•0•0•Updated Aug 14, 2019Aug 14, 2019

    • rpca-mkl

      Public
      Implementation of randomized PCA using Intel MKL
      pcarandomized-algorithmintel-mkl-library
      pcarandomized-algorithmintel-mkl-library
      C++
      •0•2•4•0•Updated Jul 31, 2019Jul 31, 2019
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