Repositories list

• oxo2

  Public
  A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

  Java

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated May 2, 2026May 2, 2026

• efo

  Public
  Github repo for the Experimental Factor Ontology (EFO)

  Python

  •1515 forks•6363 stars•202202 issues•1313 pull requests•Updated May 1, 2026May 1, 2026

• gwas-utils

  Public
  Collection of tools and scripts to manage GWAS Catalog related infrastructure.

  quality-controltoolboxdata-release

  quality-controltoolboxdata-release

  Python

  •33 forks•66 stars•1010 issues•22 pull requests•Updated May 1, 2026May 1, 2026

• ols4

  Public
  The EMBL-EBI Ontology Lookup Service (OLS)

  mcpowlembeddings+ 7

  mcpowlembeddingsknowledge-graphontologiessemantic-searchknowledge-managementknowledge-representationfair-datamcp-server

  Java

  •

  Apache License 2.0

  •4040 forks•8787 stars•8686 issues•1616 pull requests•Updated May 1, 2026May 1, 2026

• zooma2

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• goci

  Public
  GWAS Catalog Ontology and Curation Infrastructure

  Java

  •

  Apache License 2.0

  •1919 forks•2626 stars•319319 issues•99 pull requests•Updated Apr 30, 2026Apr 30, 2026

• GrEBI

  Public
  HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

  data-miningbioinformaticsneo4j+ 5

  data-miningbioinformaticsneo4jmcpdata-integrationontologiesknowledge-graphsmcp-server

  Jupyter Notebook

  •

  Apache License 2.0

  •33 forks•44 stars•1616 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• gwas-ui

  Public
  JavaScript

  •

  Apache License 2.0

  •33 forks•55 stars•1818 issues•55 pull requests•Updated Apr 27, 2026Apr 27, 2026

• gwas-beyond-snps

  Public
  Supporting new types of genetic variation in the GWAS Catalog

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• gwas-data-services

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•44 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• gwasdepo-audit-service

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• gwasdepo-ingest-service

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• gwas-sumstats-service

  Public
  Summary statistics service

  Python

  •00 forks•33 stars•1919 issues•1313 pull requests•Updated Apr 20, 2026Apr 20, 2026

• gwasdepo-deposition-service

  Public
  Java

  •

  Apache License 2.0

  •11 fork•00 stars•88 issues•33 pull requests•Updated Apr 20, 2026Apr 20, 2026

• gwas-data-commons

  Public
  This repo will be having common components used across multiple services

  Java

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• gwas-sumstats-tools

  Public
  gwas-sumstats-tools

  Python

  •

  Apache License 2.0

  •11 fork•1212 stars•55 issues•22 pull requests•Updated Apr 17, 2026Apr 17, 2026

• gwas-sumstats-tools-ssf-morph

  Public
  Format gwas summary statistic data into gwas-ssf

  JavaScript

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• efo-llm-assessment

  Public
  Github repo for testing the LLM capabilities to edit the Experimental Factor Ontology (EFO)

  Makefile

  •1515 forks•00 stars•00 issues•22 pull requests•Updated Apr 15, 2026Apr 15, 2026

• gwas-sumstats-harmoniser-documentation

  Public
  gwas-sumstats-harmoniser-documentation

  TypeScript

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• gwas-mcp

  Public
  GWAS Catalog Model Context Protocol server, supporting natural language queries of associations, studies, and traits

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• gwas-curation-service

  Public
  Java

  •00 forks•00 stars•1111 issues•22 pull requests•Updated Mar 27, 2026Mar 27, 2026

• gwas-rest-api

  Public
  Refactoring Code for Rest API

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•33 issues•11 pull request•Updated Mar 27, 2026Mar 27, 2026

• gwas-curation-ui

  Public
  The New Curation Front End interface for the GWAS Catalog

  TypeScript

  •00 forks•00 stars•44 issues•11 pull request•Updated Mar 19, 2026Mar 19, 2026

• gwasdepo-commons

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• otar_profiler

  Public
  Pipeline for creating Open Targets profile and slim files from EFO.

  Ruby

  •00 forks•44 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• gwasdepo-template-validator

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•22 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• PEGASUS

  Public
  Predicted effector gene standard

  TypeScript

  •00 forks•11 star•00 issues•22 pull requests•Updated Feb 26, 2026Feb 26, 2026

• scatlas_ontology

  Public
  SCA_Ontology

  Makefile

  •22 forks•44 stars•1212 issues•33 pull requests•Updated Jan 19, 2026Jan 19, 2026

• gwas-template-services

  Public
  Application to provide template related services for the deposition interface

  Python

  •11 fork•55 stars•55 issues•1212 pull requests•Updated Jan 7, 2026Jan 7, 2026

• gwas-sumstats-harmoniser

  Public
  GWAS Summary Statistics Data Harmonisation

  Python

  •2121 forks•2727 stars•1616 issues•1010 pull requests•Updated Jan 7, 2026Jan 7, 2026