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    7 repositories

    • ATACPrimerTool

      Public
      Primer design for ATAC-qPCR
      Python
      •7•13•3•0•Updated Jan 11, 2022Jan 11, 2022

    • ecDNA-hub-code-2021

      Public
      Code for Hung*, Yost*, Xie*, et al. ecDNA hubs drive cooperative intermolecular oncogene expression (2021).
      R
      •0•5•0•0•Updated Nov 22, 2021Nov 22, 2021

    • TCGA_PEPATAC

      Public
      A repository containing the PEP files used for analyzing the TCGA bulk ATAC-seq data
      MIT License
      •0•2•0•0•Updated Nov 4, 2021Nov 4, 2021

    • ATAC_mito_sc

      Public
      single cell ATACseq pipeline
      Shell
      •
      GNU General Public License v3.0
      •14•8•3•1•Updated Jul 10, 2021Jul 10, 2021

    • EMBLEM

      Public
      Perl
      •1•3•0•0•Updated Dec 7, 2018Dec 7, 2018

    • pypiper

      Public
      Python toolkit for building restartable pipelines
      Python
      •9•0•0•0•Updated Dec 13, 2017Dec 13, 2017

    • FAST-iCLIP

      Public
      Fully Automated and Standardized (FAST) iCLIP analysis pipeline.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •18•22•21•0•Updated Oct 7, 2017Oct 7, 2017
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