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    27 repositories

    • cellTypeCompositions

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jun 9, 2022Jun 9, 2022

    • chiva

      Public
      [Dev] Combined HIV integration site and genomic variant analysis pipeline.
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 28, 2021May 28, 2021

    • covid_microbiome_2021

      Public
      R
      •1•0•0•0•Updated Jan 30, 2021Jan 30, 2021

    • ltrparser

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2021Jan 25, 2021

    • intSiteCaller

      Public
      R
      •
      GNU General Public License v3.0
      •9•5•10•0•Updated Jan 13, 2021Jan 13, 2021

    • HSC_diversity

      Public
      HTML
      •0•2•0•0•Updated Dec 11, 2019Dec 11, 2019

    • viral-transmission

      Public
      Code and metadata for viral transmission project
      R
      •1•0•0•0•Updated Nov 27, 2019Nov 27, 2019

    • iGUIDE

      Public
      Bioinformatic pipeline for identifying dsDNA breaks induced by designer nucleases (ie. Cas9).
      R
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Nov 12, 2019Nov 12, 2019

    • genomicHeatmapMaker

      Public
      R
      •
      GNU General Public License v3.0
      •3•0•7•0•Updated Mar 28, 2019Mar 28, 2019

    • LDppA

      Public
      Latent Dirichlet Process Prior Allocation
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 24, 2018Dec 24, 2018

    • lsf-scripts

      Public
      Helper scripts for LSF cluster usage
      Python
      •0•0•0•0•Updated Nov 27, 2018Nov 27, 2018

    • GCcontent

      Public
      calculate GC percentage for reference genomes with multiple windows
      R
      •
      GNU General Public License v3.0
      •3•0•2•1•Updated Aug 23, 2018Aug 23, 2018

    • intSiteRetriever

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•1•1•Updated Aug 23, 2018Aug 23, 2018

    • fluSera

      Public
      Code for "Sera from individuals with narrowly focused influenza virus antibodies rapidly select viral escape mutations in ovo", A. Davis, 2018
      R
      •0•0•0•0•Updated Jun 11, 2018Jun 11, 2018

    • eoe-paper

      Public
      Supporting metadata for the eosinophilic esophagitis study (PRJNA451431)
      0•0•0•0•Updated May 9, 2018May 9, 2018

    • INSPIIRED

      Public
      R
      •
      GNU General Public License v3.0
      •5•14•10•1•Updated Mar 22, 2018Mar 22, 2018

    • geneTherapyPatientReportMaker

      Public
      Single patient integration sites report
      R
      •
      GNU General Public License v3.0
      •3•1•8•0•Updated Mar 21, 2018Mar 21, 2018

    • EpigeneticHeatmapMaker

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•2•0•Updated Mar 14, 2018Mar 14, 2018

    • bilateria

      Public
      Code for generating figures and statistics for bilaterian animal microbiome project
      R
      •1•0•0•0•Updated Mar 8, 2018Mar 8, 2018

    • simIntSiteReads

      Public
      R
      •1•0•3•1•Updated Dec 13, 2017Dec 13, 2017

    • hotROCs

      Public
      ROC curve area matrix and heat map
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jul 22, 2016Jul 22, 2016

    • CancerGeneList

      Public
      maintain the list of cancer-associated genes
      R
      •
      GNU General Public License v3.0
      •2•0•3•0•Updated Jul 5, 2016Jul 5, 2016

    • intSiteUploader

      Public
      R
      •
      GNU General Public License v3.0
      •3•1•8•0•Updated Jul 5, 2016Jul 5, 2016

    • hiAnnotator

      Public
      Functions for annotating GRanges objects
      R
      •3•0•0•0•Updated Jul 5, 2016Jul 5, 2016

    • PacBio_Phage_Bact_Modification

      Public
      Python
      •2•0•0•0•Updated Apr 1, 2016Apr 1, 2016

    • PLEASE

      Public
      Data and analysis releated to the Pediatric Longitudinal Study of Elemental Diet and Stool Microbiome Composition study
      0•0•0•0•Updated Mar 28, 2016Mar 28, 2016

    • makeUCSCHubFromBedFiles

      Public
      make customer UCSC genome browser hub from bed files
      R
      •1•0•0•0•Updated Dec 9, 2015Dec 9, 2015
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