Repositories list

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 23, 2025Oct 23, 2025

• validator

  Public
  The BioPAX Validator

  Java

  •

  MIT License

  •22 forks•33 stars•33 issues•11 pull request•Updated Oct 4, 2024Oct 4, 2024

• Paxtools

  Public
  The BioPAX Object Model, API and utilities implemented in Java

  Java

  •

  MIT License

  •1313 forks•2828 stars•77 issues•00 pull requests•Updated Jul 4, 2024Jul 4, 2024

• BioPAX.github.io

  Public
  BioPAX site

  CSS

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 26, 2024Jun 26, 2024

• specification

  Public
  BioPAX specification and examples

  44 forks•22 stars•33 issues•00 pull requests•Updated Jun 17, 2024Jun 17, 2024

• paxtoolsr

  Public
  The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction datab…

  R

  •11 fork•1010 stars•66 issues•00 pull requests•Updated Jan 10, 2023Jan 10, 2023

• paxtoolsTutorial

  Public
  TeX

  •11 fork•22 stars•11 issue•00 pull requests•Updated Feb 24, 2017Feb 24, 2017

• biopax

  Public
  Core App: BioPAX support

  Java

  •

  GNU Lesser General Public License v2.1

  •22 forks•11 star•00 issues•00 pull requests•Updated Jan 14, 2016Jan 14, 2016

• biopaxWebConsole

  Public
  Online console for trying out BioPAX Paxtools Java API

  JavaScript

  •4242 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2015Oct 29, 2015

• pattern

  Public archive
  Deprecated (- moving inside the Paxtools)

  00 forks•11 star•00 issues•00 pull requests•Updated Aug 20, 2015Aug 20, 2015