Repositories list

• BEASTLabs

  Public
  A package for BEAST 2 implementing generally useful stuff

  beast2

  beast2

  Java

  •

  GNU Lesser General Public License v3.0

  •66 forks•66 stars•1212 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• beast-classic

  Public
  Automatically exported from code.google.com/p/beast-classic

  beast2

  beast2

  Java

  •

  GNU Lesser General Public License v2.1

  •55 forks•11 star•44 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• model-selection

  Public
  Automatically exported from code.google.com/p/model-selection

  beast2path-samplingstepping-stone

  beast2path-samplingstepping-stone

  Java

  •33 forks•00 stars•55 issues•00 pull requests•Updated Jan 8, 2026Jan 8, 2026

• FreeRateModel

  Public
  FreeRates model implementation for BEAST2

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• rb-beast

  Public
  Automatically exported from code.google.com/p/rb-beast

  Java

  •00 forks•11 star•11 issue•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• codonsubstmodels

  Public
  Codon substitution models for DNA

  genetic-codebeast2codon-substitution-models

  genetic-codebeast2codon-substitution-models

  Java

  •

  GNU Lesser General Public License v2.1

  •00 forks•22 stars•22 issues•00 pull requests•Updated Sep 2, 2025Sep 2, 2025

• emat

  Public
  Explicit Mutation Annotated Tree package for BEAST 2

  Java

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• substmodels

  Public
  Standard substitution models for BEAST 2

  nucleotide-substitution-models

  nucleotide-substitution-models

  Java

  •

  GNU Lesser General Public License v2.1

  •22 forks•88 stars•00 issues•00 pull requests•Updated Jul 31, 2025Jul 31, 2025

• beast-geo

  Public
  Automatically exported from code.google.com/p/beast-geo

  Java

  •11 fork•00 stars•22 issues•00 pull requests•Updated May 29, 2025May 29, 2025

• bModelTest

  Public
  Bayesian model test package for BEAST 2

  Java

  •

  GNU Lesser General Public License v2.1

  •44 forks•88 stars•22 issues•00 pull requests•Updated Mar 30, 2025Mar 30, 2025

• beast-docs

  Public
  BEAST 2 documentation

  TeX

  •22 forks•11 star•00 issues•00 pull requests•Updated Jan 15, 2025Jan 15, 2025

• bdsky

  Public
  Birth Death Serial Skyline Model for BEAST2

  birth-deathbeast2

  birth-deathbeast2

  Java

  •

  GNU General Public License v3.0

  •1313 forks•22 stars•33 issues•00 pull requests•Updated Oct 14, 2024Oct 14, 2024

• hmc

  Public
  Help Me Choose when running BEAUti

  CSS

  •

  GNU General Public License v3.0

  •00 forks•11 star•22 issues•00 pull requests•Updated Sep 2, 2024Sep 2, 2024

• nested-sampling

  Public
  Nested sampling packagin for BEAST

  Java

  •

  GNU Lesser General Public License v2.1

  •11 fork•1212 stars•88 issues•00 pull requests•Updated Jun 17, 2024Jun 17, 2024

• SNAPP

  Public
  A package for BEAST2 implementing SNAPP

  Java

  •88 forks•44 stars•88 issues•00 pull requests•Updated May 22, 2023May 22, 2023

• phylodynamics

  Public
  Bayesian phylodynamic methods in BEAST2

  beast2

  beast2

  Java

  •

  GNU General Public License v3.0

  •33 forks•66 stars•44 issues•00 pull requests•Updated Feb 22, 2023Feb 22, 2023

• cladeage

  Public
  Bayesian estimation of clade ages based on probabilities of fossil sampling

  Java

  •11 fork•00 stars•22 issues•00 pull requests•Updated Jan 3, 2023Jan 3, 2023

• MGSM

  Public
  Multi gamma and relaxed gamma site model

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 5, 2022Oct 5, 2022

• COVID19fig

  Public
  Figures for COVID19 reports

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2020Apr 29, 2020

• rbeast2

  Public
  R

  •22 forks•11 star•00 issues•00 pull requests•Updated Sep 11, 2018Sep 11, 2018

• substBMA_archive

  Public
  Automatically exported from code.google.com/p/subst-bma

  Java

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 24, 2016Feb 24, 2016

• PartitionSampler

  Public
  Substitution Dirichlet process mixture model with data blocks

  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 22, 2015Jul 22, 2015

• beast-graphics

  Public
  Automatically exported from code.google.com/p/beast-graphics

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 24, 2015May 24, 2015